parameter values (.csv)

Download original .csv file from GitHub

parameter_name

value

param_label

prior_min

prior_max

prior_note

0

init_prev_cin_hpv_cc_stage_hiv

[0.90, 0.06, 0.005, 0.005, 0.005, 0.005 ,0.005 ,0.005, 0.005 , 0.005]

undetermined

[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0]

[1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0]

vague prior

1

init_prev_cin_hpv_cc_stage_nhiv

[0.97,0.026,0.0005,0.0005,0.0005,0.0005,0.0005,0.0005, 0.0005, 0.0005]

undetermined

[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0]

[1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0]

vague prior

2

r_hpv

0.0002

undetermined

0.0

1.0

vague prior

3

r_cin1_hpv

0.001

universal

0.0

1.0

vague prior

4

prob_revert_from_cin1

0.01

undetermined

0.0

1.0

vague prior

5

r_cin2_cin1

0.05

undetermined

0.0

1.0

vague prior

6

r_cin3_cin2

0.05

undetermined

0.0

1.0

vague prior

7

r_stage1_cin3

0.05

undetermined

0.0

1.0

vague prior

8

r_stage2a_stage1

0.05

undetermined

0.0

1.0

vague prior

9

r_stage2b_stage2a

0.05

undetermined

0.0

1.0

vague prior

10

r_stage3_stage2b

0.05

undetermined

0.0

1.0

vague prior

11

r_stage4_stage3

0.1

undetermined

0.0

1.0

vague prior

12

rr_hpv_age50plus

0.1

universal

0.01

100.0

vague prior

13

rr_progress_cc_hiv

30

universal

0.01

100.0

vague prior

14

rr_hpv_vaccinated

0.5

universal

0.01

100.0

vague prior

15

prob_cure_stage1

0.8

universal

0.0

1.0

vague prior

16

prob_cure_stage2a

0.7

universal

0.0

1.0

vague prior

17

prob_cure_stage2b

0.2

universal

0.0

1.0

vague prior

18

prob_cure_stage3

0.05

universal

0.0

1.0

vague prior

19

r_death_cervical_cancer

0.1

universal

0.0

1.0

vague prior

20

p_vaginal_bleeding_if_no_cc

0.00001

universal

0.0

1.0

vague prior

21

r_vaginal_bleeding_cc_stage1

0.1

universal

0.0

1.0

vague prior

22

rr_vaginal_bleeding_cc_stage2a

2

universal

0.01

100.0

vague prior

23

rr_vaginal_bleeding_cc_stage2b

3

universal

0.01

100.0

vague prior

24

rr_vaginal_bleeding_cc_stage3

5

universal

0.01

100.0

vague prior

25

rr_vaginal_bleeding_cc_stage4

10

universal

0.01

100.0

vague prior

26

prob_referral_biopsy_given_vaginal_bleeding

0.8

local

0.0

1.0

vague prior

27

prob_via_screen

0.03

local

0.0

1.0

vague prior

28

prob_xpert_screen

0.03

local

0.0

1.0

vague prior

29

sensitivity_of_biopsy_for_cervical_cancer

0.85

universal

0.0

1.0

vague prior

30

sensitivity_of_via_for_cin_cc

0.75

universal

0.0

1.0

vague prior

31

sensitivity_of_xpert_for_hpv_cin_cc

0.75

universal

0.0

1.0

vague prior

32

prob_thermoabl_successful

0.85

universal

0.0

1.0

vague prior

33

prob_cryotherapy_successful

0.85

universal

0.0

1.0

vague prior

34

transition_screening_method_year

2024

local

2000

2100

vague prior

35

transition_to_thermo_year

2024

local

2000

2100

vague prior

36

screening_min_age_hv_neg

30

local

10

100

vague prior

37

screening_max_age_hv_neg

50

local

10

100

vague prior

38

screening_min_age_hv_pos

25

local

10

100

vague prior

39

screening_max_age_hv_pos

50

local

10

100

vague prior

40

yrs_between_screen_hv_pos

3

local

1

10

vague prior

41

yrs_between_screen_hv_neg

5

local

1

10

vague prior

42

palliative_care_bed_days

15

local

1

50

vague prior

43

stage_1_3_daly_wt

607

universal

structural assumption

44

stage_1_3_treated_daly_wt

608

universal

structural assumption

45

stage4_daly_wt

609

universal

structural assumption

46

min_yrs_between_screening_if_cin_treated

1

local

1

10

vague prior