parameter values (.csv)
Download original .csv file from GitHub
parameter_name |
value |
param_label |
prior_min |
prior_max |
prior_note |
reference |
|
|---|---|---|---|---|---|---|---|
0 |
init_prev_cin_hpv_cc_stage_hiv |
[0.90, 0.06, 0.005, 0.005, 0.005, 0.005 ,0.005 ,0.005, 0.005 , 0.005] |
local |
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0] |
[1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0] |
vague prior |
N/A |
1 |
init_prev_cin_hpv_cc_stage_nhiv |
[0.97,0.026,0.0005,0.0005,0.0005,0.0005,0.0005,0.0005, 0.0005, 0.0005] |
local |
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0] |
[1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0] |
vague prior |
N/A |
2 |
r_hpv |
0.0002 |
undetermined |
0 |
1 |
calibration |
N/A |
3 |
r_cin1_hpv |
0.001 |
undetermined |
0 |
1 |
calibration |
N/A |
4 |
prob_revert_from_cin1 |
0.01 |
undetermined |
0 |
1 |
calibration |
N/A |
5 |
r_cin2_cin1 |
0.05 |
undetermined |
0 |
1 |
calibration |
N/A |
6 |
r_cin3_cin2 |
0.05 |
undetermined |
0 |
1 |
calibration |
N/A |
7 |
r_stage1_cin3 |
0.05 |
undetermined |
0 |
1 |
calibration |
N/A |
8 |
r_stage2a_stage1 |
0.05 |
undetermined |
0 |
1 |
calibration |
N/A |
9 |
r_stage2b_stage2a |
0.05 |
undetermined |
0 |
1 |
calibration |
N/A |
10 |
r_stage3_stage2b |
0.05 |
undetermined |
0 |
1 |
calibration |
N/A |
11 |
r_stage4_stage3 |
0.1 |
undetermined |
0 |
1 |
calibration |
N/A |
12 |
rr_hpv_age50plus |
0.1 |
universal |
0.01 |
100 |
vague prior |
Missing |
13 |
rr_progress_cc_hiv |
30 |
universal |
0.01 |
100 |
vague prior |
Missing |
14 |
rr_hpv_vaccinated |
0.5 |
universal |
0.01 |
100 |
vague prior |
Missing |
15 |
prob_cure_stage1 |
0.8 |
universal |
0 |
1 |
vague prior |
Missing |
16 |
prob_cure_stage2a |
0.7 |
universal |
0 |
1 |
vague prior |
Missing |
17 |
prob_cure_stage2b |
0.2 |
universal |
0 |
1 |
vague prior |
Missing |
18 |
prob_cure_stage3 |
0.05 |
universal |
0 |
1 |
vague prior |
Missing |
19 |
r_death_cervical_cancer |
0.1 |
universal |
0 |
1 |
vague prior |
Missing |
20 |
p_vaginal_bleeding_if_no_cc |
0.00001 |
universal |
0 |
1 |
vague prior |
Missing |
21 |
r_vaginal_bleeding_cc_stage1 |
0.1 |
universal |
0 |
1 |
vague prior |
Missing |
22 |
rr_vaginal_bleeding_cc_stage2a |
2 |
universal |
0.01 |
100 |
vague prior |
Missing |
23 |
rr_vaginal_bleeding_cc_stage2b |
3 |
universal |
0.01 |
100 |
vague prior |
Missing |
24 |
rr_vaginal_bleeding_cc_stage3 |
5 |
universal |
0.01 |
100 |
vague prior |
Missing |
25 |
rr_vaginal_bleeding_cc_stage4 |
10 |
universal |
0.01 |
100 |
vague prior |
Missing |
26 |
prob_referral_biopsy_given_vaginal_bleeding |
0.8 |
local |
0 |
1 |
vague prior |
Missing |
27 |
prob_via_screen |
0.03 |
local |
0 |
1 |
vague prior |
Missing |
28 |
prob_xpert_screen |
0.03 |
local |
0 |
1 |
vague prior |
Missing |
29 |
sensitivity_of_biopsy_for_cervical_cancer |
0.85 |
universal |
0 |
1 |
vague prior |
Missing |
30 |
sensitivity_of_via_for_cin_cc |
0.75 |
universal |
0 |
1 |
vague prior |
Mustafa et al 2016 |
31 |
sensitivity_of_xpert_for_hpv_cin_cc |
0.75 |
universal |
0 |
1 |
vague prior |
Mustafa et al 2016 |
32 |
prob_thermoabl_successful |
0.85 |
universal |
0 |
1 |
vague prior |
https://www.imrpress.com/journal/CEOG/51/3/10.31083/j.ceog5103072/htm |
33 |
prob_cryotherapy_successful |
0.85 |
universal |
0 |
1 |
vague prior |
https://www.imrpress.com/journal/CEOG/51/3/10.31083/j.ceog5103072/htm |
34 |
transition_screening_method_year |
2024 |
local |
2000 |
2100 |
vague prior |
personal communication: Dr Lameck Chinula |
35 |
transition_to_thermo_year |
2024 |
local |
2000 |
2100 |
vague prior |
personal communication: Dr Lameck Chinula |
36 |
screening_min_age_hv_neg |
30 |
local |
10 |
100 |
vague prior |
Malawi National Cervical Cancer Strategic Plan 2022-2026 |
37 |
screening_max_age_hv_neg |
50 |
local |
10 |
100 |
vague prior |
Malawi National Cervical Cancer Strategic Plan 2022-2027 |
38 |
screening_min_age_hv_pos |
25 |
local |
10 |
100 |
vague prior |
Malawi National Cervical Cancer Strategic Plan 2022-2028 |
39 |
screening_max_age_hv_pos |
50 |
local |
10 |
100 |
vague prior |
Malawi National Cervical Cancer Strategic Plan 2022-2029 |
40 |
yrs_between_screen_hv_pos |
3 |
local |
1 |
10 |
vague prior |
Missing |
41 |
yrs_between_screen_hv_neg |
5 |
local |
1 |
10 |
vague prior |
Missing |
42 |
palliative_care_bed_days |
15 |
local |
1 |
50 |
vague prior |
Missing |
43 |
stage_1_3_daly_wt |
607 |
universal |
N/A |
N/A |
definition |
N/A |
44 |
stage_1_3_treated_daly_wt |
608 |
universal |
N/A |
N/A |
definition |
N/A |
45 |
stage4_daly_wt |
609 |
universal |
N/A |
N/A |
definition |
N/A |
46 |
min_yrs_between_screening_if_cin_treated |
1 |
local |
1 |
10 |
vague prior |
Missing |
47 |
death_timing_spread_days |
90 |
undetermined |
1 |
365 |
design feature |
N/A |
48 |
initial_post_treatment_check_months |
3 |
local |
1 |
36 |
vague prior |
Missing |
49 |
months_to_next_appt_treated_less_than_12_mo_ago |
3 |
local |
1 |
36 |
vague prior |
Missing |
50 |
months_to_next_appt_treated_12_to_36_mo_ago |
6 |
local |
1 |
36 |
vague prior |
Missing |
51 |
months_to_next_appt_treated_36_to_60_mo_ago |
12 |
local |
1 |
36 |
vague prior |
Missing |
52 |
palliative_care_interval_months |
1 |
local |
0.5 |
12 |
vague prior |
Missing |
53 |
main_polling_frequency_months |
1 |
undetermined |
1 |
12 |
design decision |
N/A |