parameter values (.csv)

Download original .csv file from GitHub

parameter_name

value

param_label

prior_min

prior_max

prior_note

reference

0

init_prev_cin_hpv_cc_stage_hiv

[0.90, 0.06, 0.005, 0.005, 0.005, 0.005 ,0.005 ,0.005, 0.005 , 0.005]

local

[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0]

[1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0]

vague prior

N/A

1

init_prev_cin_hpv_cc_stage_nhiv

[0.97,0.026,0.0005,0.0005,0.0005,0.0005,0.0005,0.0005, 0.0005, 0.0005]

local

[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0]

[1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0]

vague prior

N/A

2

r_hpv

0.0002

undetermined

0

1

calibration

N/A

3

r_cin1_hpv

0.001

undetermined

0

1

calibration

N/A

4

prob_revert_from_cin1

0.01

undetermined

0

1

calibration

N/A

5

r_cin2_cin1

0.05

undetermined

0

1

calibration

N/A

6

r_cin3_cin2

0.05

undetermined

0

1

calibration

N/A

7

r_stage1_cin3

0.05

undetermined

0

1

calibration

N/A

8

r_stage2a_stage1

0.05

undetermined

0

1

calibration

N/A

9

r_stage2b_stage2a

0.05

undetermined

0

1

calibration

N/A

10

r_stage3_stage2b

0.05

undetermined

0

1

calibration

N/A

11

r_stage4_stage3

0.1

undetermined

0

1

calibration

N/A

12

rr_hpv_age50plus

0.1

universal

0.01

100

vague prior

Missing

13

rr_progress_cc_hiv

30

universal

0.01

100

vague prior

Missing

14

rr_hpv_vaccinated

0.5

universal

0.01

100

vague prior

Missing

15

prob_cure_stage1

0.8

universal

0

1

vague prior

Missing

16

prob_cure_stage2a

0.7

universal

0

1

vague prior

Missing

17

prob_cure_stage2b

0.2

universal

0

1

vague prior

Missing

18

prob_cure_stage3

0.05

universal

0

1

vague prior

Missing

19

r_death_cervical_cancer

0.1

universal

0

1

vague prior

Missing

20

p_vaginal_bleeding_if_no_cc

0.00001

universal

0

1

vague prior

Missing

21

r_vaginal_bleeding_cc_stage1

0.1

universal

0

1

vague prior

Missing

22

rr_vaginal_bleeding_cc_stage2a

2

universal

0.01

100

vague prior

Missing

23

rr_vaginal_bleeding_cc_stage2b

3

universal

0.01

100

vague prior

Missing

24

rr_vaginal_bleeding_cc_stage3

5

universal

0.01

100

vague prior

Missing

25

rr_vaginal_bleeding_cc_stage4

10

universal

0.01

100

vague prior

Missing

26

prob_referral_biopsy_given_vaginal_bleeding

0.8

local

0

1

vague prior

Missing

27

prob_via_screen

0.03

local

0

1

vague prior

Missing

28

prob_xpert_screen

0.03

local

0

1

vague prior

Missing

29

sensitivity_of_biopsy_for_cervical_cancer

0.85

universal

0

1

vague prior

Missing

30

sensitivity_of_via_for_cin_cc

0.75

universal

0

1

vague prior

Mustafa et al 2016

31

sensitivity_of_xpert_for_hpv_cin_cc

0.75

universal

0

1

vague prior

Mustafa et al 2016

32

prob_thermoabl_successful

0.85

universal

0

1

vague prior

https://www.imrpress.com/journal/CEOG/51/3/10.31083/j.ceog5103072/htm

33

prob_cryotherapy_successful

0.85

universal

0

1

vague prior

https://www.imrpress.com/journal/CEOG/51/3/10.31083/j.ceog5103072/htm

34

transition_screening_method_year

2024

local

2000

2100

vague prior

personal communication: Dr Lameck Chinula

35

transition_to_thermo_year

2024

local

2000

2100

vague prior

personal communication: Dr Lameck Chinula

36

screening_min_age_hv_neg

30

local

10

100

vague prior

Malawi National Cervical Cancer Strategic Plan 2022-2026

37

screening_max_age_hv_neg

50

local

10

100

vague prior

Malawi National Cervical Cancer Strategic Plan 2022-2027

38

screening_min_age_hv_pos

25

local

10

100

vague prior

Malawi National Cervical Cancer Strategic Plan 2022-2028

39

screening_max_age_hv_pos

50

local

10

100

vague prior

Malawi National Cervical Cancer Strategic Plan 2022-2029

40

yrs_between_screen_hv_pos

3

local

1

10

vague prior

Missing

41

yrs_between_screen_hv_neg

5

local

1

10

vague prior

Missing

42

palliative_care_bed_days

15

local

1

50

vague prior

Missing

43

stage_1_3_daly_wt

607

universal

N/A

N/A

definition

N/A

44

stage_1_3_treated_daly_wt

608

universal

N/A

N/A

definition

N/A

45

stage4_daly_wt

609

universal

N/A

N/A

definition

N/A

46

min_yrs_between_screening_if_cin_treated

1

local

1

10

vague prior

Missing

47

death_timing_spread_days

90

undetermined

1

365

design feature

N/A

48

initial_post_treatment_check_months

3

local

1

36

vague prior

Missing

49

months_to_next_appt_treated_less_than_12_mo_ago

3

local

1

36

vague prior

Missing

50

months_to_next_appt_treated_12_to_36_mo_ago

6

local

1

36

vague prior

Missing

51

months_to_next_appt_treated_36_to_60_mo_ago

12

local

1

36

vague prior

Missing

52

palliative_care_interval_months

1

local

0.5

12

vague prior

Missing

53

main_polling_frequency_months

1

undetermined

1

12

design decision

N/A