TB (.xlsx)

Download original .xlsx file from GitHub

parameters

parameter_name

value

lower

upper

notes

0

scaling_factor_WHO

1.60303

1

prop_mdr2010

0.0186

2

monthly_prob_relapse_tx_complete

0.0027

0.0014

0.00405

3

monthly_prob_relapse_tx_incomplete

0.0116

0.0058

0.0174

4

monthly_prob_relapse_2yrs

0.0001

5e-05

0.0015

5

rr_relapse_hiv

4.7

6

rr_relapse_diabetes

1.86

Huangfu et al 2019

7

duration_active_disease_years

3

8

prop_smear_positive

0.62

0.42

0.8

9

prop_smear_positive_hiv

0.35

0.19

0.54

10

death_rate_child0_4_treated

0.05

11

death_rate_child5_14_treated

0.06

12

death_rate_adult_treated

0.107

changed from 0.086

13

death_rate_smear_pos_untreated

0.7

14

death_rate_smear_neg_untreated

0.2

15

rr_death_diabetes

1.51

Huangfu et al 2019

16

rr_tb_child

0.1

assumed

17

rr_tb_bcg

0.42

18

rr_tb_hiv

5

assumed

20.6getahun2010

19

rr_tb_aids

26

assumed

26williams_pnas

20

rr_tb_art_adult

0.35

21

rr_tb_art_child

0.3

22

rr_tb_obese

0.4

23

rr_tb_diabetes

3

24

rr_tb_alcohol

2.9

25

rr_tb_smoking

1.3

26

rr_ipt_adult

0.4

27

rr_ipt_child

0.55

28

rr_ipt_adult_hiv

0.68

29

rr_ipt_child_hiv

0.31

30

rr_ipt_art_child

0.76

31

rr_ipt_art_adult

0.63

32

sens_xpert_smear_negative

0.68

33

sens_xpert_smear_positive

0.98

34

spec_xpert_smear_negative

0.99

35

spec_xpert_smear_positive

0.99

36

sens_sputum_smear_positive

1

37

spec_sputum_smear_positive

1

38

sens_clinical

0.209

0.12

0.33

39

spec_clinical

0.953

0.92

0.97

40

sens_xray_smear_negative

0.8

41

sens_xray_smear_positive

0.91

42

spec_xray_smear_negative

0.67

43

spec_xray_smear_positive

0.67

44

prob_tx_success_ds

0.837

45

prob_tx_success_mdr

0.597

46

prob_tx_success_0_4

0.94

47

prob_tx_success_5_14

0.92

48

rate_testing_general_pop

0.025

49

ds_treatment_length

6

50

ds_retreatment_length

8

51

mdr_treatment_length

24

52

prob_retained_ipt_6_months

0.9

53

age_eligibility_for_ipt

5

54

ipt_start_date

2014

55

first_line_test

sputum

56

second_line_test

xpert

57

tb_healthseekingbehaviour_cap

5

58

data_end

2022

59

length_of_inpatient_stay_if_terminal

[5,10]

60

type_of_scaleup

none

61

scaleup_start_year

2025

scaleup_parameters

parameter

target_value

min_value

max_value

0

tb_treatment_coverage

90

0

100

1

tb_prob_tx_success_ds

0.9

0

1

2

tb_prob_tx_success_mdr

0.9

0

1

3

tb_prob_tx_success_0_4

0.9

0

1

4

tb_prob_tx_success_5_14

0.9

0

1

5

first_line_test

xpert

sputum

xpert

6

second_line_test

sputum

sputum

xpert

7

ipt_coverage_plhiv

0.9

0

1

8

ipt_coverage_paediatric

90

0

100

calibrated_transmission_rates

draw

hiv

tb

deviance

0

1

0.125176

16.7101

0.814946

1

12

0.121988

18.0221

0.83383

2

0

0.10922

15.8241

0.862322

3

9

0.115698

19.2184

0.92932

4

16

0.13272

15.4037

0.96256

IPTdistricts

district_name

region

0

Lilongwe City

central

1

Blantyre

southern

2

Mangochi

southern

3

Machinga

southern

4

Chikwawa

southern

5

Mzimba

northern

6

Thyolo

southern

7

Mulanje

southern

8

Nsanje

southern

9

Chiradzulu

southern

all_districts

district_name

0

Balaka

1

Blantyre

2

Blantyre City

3

Chikwawa

4

Chiradzulu

5

Chitipa

6

Dedza

7

Dowa

8

Karonga

9

Kasungu

10

Likoma

11

Lilongwe

12

Lilongwe City

13

Machinga

14

Mangochi

15

Mchinji

16

Mulanje

17

Mwanza

18

Mzimba

19

Mzuzu City

20

Neno

21

Nkhata Bay

22

Nkhotakota

23

Nsanje

24

Ntcheu

25

Ntchisi

26

Phalombe

27

Rumphi

28

Salima

29

Thyolo

30

Zomba

31

Zomba City

ipt_coverage

year

coverage_plhiv

source

coverage_paediatric

source2

0

2010

0

not_implemented

0

1

2011

0

not_implemented

0

2

2012

0

not_implemented

0

3

2013

0

not_implemented

0

4

2014

0

not_implemented

35

NTP2019

5

2015

0

not_implemented

42

NTP2019

6

2016

0

not_implemented

51

NTP2019

7

2017

0

not_implemented

61

NTP2019

8

2018

0.31

MoH_quart_repQ1

57

NTP2019

9

2019

0.3

MoH_quart_repQ2

57

NTP2020

10

2020

0.11

MoH_quart_repQ3

48

NTP2020

11

2021

0.3

no_data

41

NTP2021

12

2022

0.3

no_data

57

13

2023

0.3

no_data

57

14

2024

0.3

no_data

57

15

2025

0.3

no_data

57

16

2026

0.3

no_data

57

17

2027

0.3

no_data

57

18

2028

0.3

no_data

57

19

2029

0.3

no_data

57

20

2030

0.3

no_data

57

21

2031

0.3

no_data

57

22

2032

0.3

no_data

57

23

2033

0.3

no_data

57

24

2034

0.3

no_data

57

25

2035

0.3

no_data

57

26

2036

0.3

no_data

57

27

2037

0.3

no_data

57

28

2038

0.3

no_data

57

29

2039

0.3

no_data

57

30

2040

0.3

no_data

57

31

2041

0.3

no_data

57

32

2042

0.3

no_data

57

33

2043

0.3

no_data

57

34

2044

0.3

no_data

57

35

2045

0.3

no_data

57

36

2046

0.3

no_data

57

37

2047

0.3

no_data

57

38

2048

0.3

no_data

57

39

2049

0.3

no_data

57

40

2050

0.3

no_data

57

testing_rates

year

testing_rate_active_cases

treatment_coverage

source

0

2010

45

45

assumed

1

2011

45

45

assumed

2

2012

47

47

who_reports_treatment_coverage

3

2013

44

44

who_reports_treatment_coverage

4

2014

45

45

who_reports_treatment_coverage

5

2015

50

50

who_reports_treatment_coverage

6

2016

58

58

who_reports_treatment_coverage

7

2017

71

71

who_reports_treatment_coverage

8

2018

75

75

assumed

9

2019

75

75

assumed

10

2020

75

75

assumed

11

2021

75

75

assumed

12

2022

75

75

assumed

13

2023

75

75

assumed

14

2024

75

75

assumed

15

2025

75

75

assumed

16

2026

75

75

assumed

17

2027

75

75

assumed

18

2028

75

75

assumed

19

2029

75

75

assumed

20

2030

75

75

assumed

21

2031

75

75

assumed

22

2032

75

75

assumed

23

2033

75

75

assumed

24

2034

75

75

assumed

25

2035

75

75

assumed

26

2036

75

75

assumed

27

2037

75

75

assumed

28

2038

75

75

assumed

29

2039

75

75

assumed

30

2040

75

75

assumed

31

2041

75

75

assumed

32

2042

75

75

assumed

33

2043

75

75

assumed

34

2044

75

75

assumed

35

2045

75

75

assumed

36

2046

75

75

assumed

37

2047

75

75

assumed

38

2048

75

75

assumed

39

2049

75

75

assumed

40

2050

75

75

assumed

pulm_tb

age

hiv

prob_pulm

0

0

False

0.7

1

1

False

0.74

2

2

False

0.91

3

3

False

0.91

4

4

False

0.91

5

5

False

0.89

6

6

False

0.89

7

7

False

0.89

8

8

False

0.89

9

9

False

0.89

10

10

False

0.99

11

11

False

0.99

12

12

False

0.99

13

13

False

0.99

14

14

False

0.99

15

15

False

0.8

16

16

False

0.8

17

17

False

0.8

18

18

False

0.8

19

19

False

0.8

20

20

False

0.8

21

21

False

0.8

22

22

False

0.8

23

23

False

0.8

24

24

False

0.8

25

25

False

0.8

26

26

False

0.8

27

27

False

0.8

28

28

False

0.8

29

29

False

0.8

30

30

False

0.8

31

31

False

0.8

32

32

False

0.8

33

33

False

0.8

34

34

False

0.8

35

35

False

0.8

36

36

False

0.8

37

37

False

0.8

38

38

False

0.8

39

39

False

0.8

40

40

False

0.8

41

41

False

0.8

42

42

False

0.8

43

43

False

0.8

44

44

False

0.8

45

45

False

0.8

46

46

False

0.8

47

47

False

0.8

48

48

False

0.8

49

49

False

0.8

50

50

False

0.8

51

51

False

0.8

52

52

False

0.8

53

53

False

0.8

54

54

False

0.8

55

55

False

0.8

56

56

False

0.8

57

57

False

0.8

58

58

False

0.8

59

59

False

0.8

60

60

False

0.8

61

61

False

0.8

62

62

False

0.8

63

63

False

0.8

64

64

False

0.8

65

65

False

0.8

66

66

False

0.8

67

67

False

0.8

68

68

False

0.8

69

69

False

0.8

70

70

False

0.8

71

71

False

0.8

72

72

False

0.8

73

73

False

0.8

74

74

False

0.8

75

75

False

0.8

76

76

False

0.8

77

77

False

0.8

78

78

False

0.8

79

79

False

0.8

80

80

False

0.8

81

81

False

0.8

82

82

False

0.8

83

83

False

0.8

84

84

False

0.8

85

85

False

0.8

86

86

False

0.8

87

87

False

0.8

88

88

False

0.8

89

89

False

0.8

90

90

False

0.8

91

91

False

0.8

92

92

False

0.8

93

93

False

0.8

94

94

False

0.8

95

95

False

0.8

96

96

False

0.8

97

97

False

0.8

98

98

False

0.8

99

99

False

0.8

100

100

False

0.8

101

0

True

0.5

102

1

True

0.5

103

2

True

0.5

104

3

True

0.5

105

4

True

0.5

106

5

True

0.5

107

6

True

0.5

108

7

True

0.5

109

8

True

0.5

110

9

True

0.5

111

10

True

0.5

112

11

True

0.5

113

12

True

0.5

114

13

True

0.5

115

14

True

0.5

116

15

True

0.5

117

16

True

0.5

118

17

True

0.5

119

18

True

0.5

120

19

True

0.5

121

20

True

0.5

122

21

True

0.5

123

22

True

0.5

124

23

True

0.5

125

24

True

0.5

126

25

True

0.5

127

26

True

0.5

128

27

True

0.5

129

28

True

0.5

130

29

True

0.5

131

30

True

0.5

132

31

True

0.5

133

32

True

0.5

134

33

True

0.5

135

34

True

0.5

136

35

True

0.5

137

36

True

0.5

138

37

True

0.5

139

38

True

0.5

140

39

True

0.5

141

40

True

0.5

142

41

True

0.5

143

42

True

0.5

144

43

True

0.5

145

44

True

0.5

146

45

True

0.5

147

46

True

0.5

148

47

True

0.5

149

48

True

0.5

150

49

True

0.5

151

50

True

0.5

152

51

True

0.5

153

52

True

0.5

154

53

True

0.5

155

54

True

0.5

156

55

True

0.5

157

56

True

0.5

158

57

True

0.5

159

58

True

0.5

160

59

True

0.5

161

60

True

0.5

162

61

True

0.5

163

62

True

0.5

164

63

True

0.5

165

64

True

0.5

166

65

True

0.5

167

66

True

0.5

168

67

True

0.5

169

68

True

0.5

170

69

True

0.5

171

70

True

0.5

172

71

True

0.5

173

72

True

0.5

174

73

True

0.5

175

74

True

0.5

176

75

True

0.5

177

76

True

0.5

178

77

True

0.5

179

78

True

0.5

180

79

True

0.5

181

80

True

0.5

182

81

True

0.5

183

82

True

0.5

184

83

True

0.5

185

84

True

0.5

186

85

True

0.5

187

86

True

0.5

188

87

True

0.5

189

88

True

0.5

190

89

True

0.5

191

90

True

0.5

192

91

True

0.5

193

92

True

0.5

194

93

True

0.5

195

94

True

0.5

196

95

True

0.5

197

96

True

0.5

198

97

True

0.5

199

98

True

0.5

200

99

True

0.5

201

100

True

0.5

additional_params

prop_pulm

0.8

0

prop_pulm_hiv

0.5

1

prop_pulm_1yr

0.7

2

prop_pulm_1_2yr

0.74

3

prop_pulm_2_5yr

0.91

4

prop_pulm_5_10yr

0.89

5

prop_pulm_10yr

0.99

6

rr_tbm_bcg

0.27

7

rr_miliary_bcg

0.23

cases2010district

district

region

cases_2010

pop

proportion_active

all_cases

whole_pop

general_prob

0

Balaka

Southern

1563

438379

0.00356541

50000

17563749

0.00284677

1

Blantyre

Southern

1563

451220

0.00346394

50000

17563749

0.00284677

2

Blantyre City

Southern

1563

800264

0.00195311

50000

17563749

0.00284677

3

Chikwawa

Southern

1563

564684

0.00276792

50000

17563749

0.00284677

4

Chiradzulu

Southern

1563

356875

0.00437968

50000

17563749

0.00284677

5

Chitipa

Northern

1563

234927

0.00665313

50000

17563749

0.00284677

6

Dedza

Central

1563

830512

0.00188197

50000

17563749

0.00284677

7

Dowa

Central

1563

772569

0.00202312

50000

17563749

0.00284677

8

Karonga

Northern

1563

365028

0.00428186

50000

17563749

0.00284677

9

Kasungu

Central

1563

842953

0.0018542

50000

17563749

0.00284677

10

Likoma

Northern

1563

14527

0.107593

50000

17563749

0.00284677

11

Lilongwe

Central

1563

1637583

0.000954455

50000

17563749

0.00284677

12

Lilongwe City

Central

1563

989318

0.00157988

50000

17563749

0.00284677

13

Machinga

Southern

1563

735438

0.00212526

50000

17563749

0.00284677

14

Mangochi

Southern

1563

1148611

0.00136077

50000

17563749

0.00284677

15

Mchinji

Central

1563

602305

0.00259503

50000

17563749

0.00284677

16

Mulanje

Southern

1563

684107

0.00228473

50000

17563749

0.00284677

17

Mwanza

Southern

1563

130949

0.0119359

50000

17563749

0.00284677

18

Mzimba

Northern

1563

936250

0.00166943

50000

17563749

0.00284677

19

Mzuzu City

Northern

1563

221272

0.0070637

50000

17563749

0.00284677

20

Neno

Southern

1563

138291

0.0113023

50000

17563749

0.00284677

21

Nkhata Bay

Northern

1563

285795

0.00546896

50000

17563749

0.00284677

22

Nkhotakota

Central

1563

395897

0.003948

50000

17563749

0.00284677

23

Nsanje

Southern

1563

299168

0.00522449

50000

17563749

0.00284677

24

Ntcheu

Central

1563

659608

0.00236959

50000

17563749

0.00284677

25

Ntchisi

Central

1563

317069

0.00492953

50000

17563749

0.00284677

26

Phalombe

Southern

1563

429450

0.00363954

50000

17563749

0.00284677

27

Rumphi

Northern

1563

229161

0.00682053

50000

17563749

0.00284677

28

Salima

Central

1563

478346

0.00326751

50000

17563749

0.00284677

29

Thyolo

Southern

1563

721456

0.00216645

50000

17563749

0.00284677

30

Zomba

Southern

1563

746724

0.00209314

50000

17563749

0.00284677

31

Zomba City

Southern

1563

105013

0.0148839

50000

17563749

0.00284677

details_rates

parameter

value1

value2

value3

value4

monthly_rate

monthly_probability

Unnamed: 7

source

Unnamed: 9

0

prop_fast_progressor

0.14

vynnycky

1

transmission_rate

4.9

juan

2

annual_progression_to_active_rate

0.05

0.004166666666666667

0.004157998154890041

horsburgh

3

rr_tb_with_hiv_stages

3.44

6.76

13.28

26.06

williams_pnas2010

4

rr_tb_art

0.35

suthar_juan

5

rr_tb_ipt

0.63

rangaka_juan

6

rr_tb_malnourished

2.1

lonroth2010_dcp3

7

rr_tb_diabetes1

3

joen2008_dcp3

8

rr_tb_alcohol

2.9

lonroth2008_dcp3

9

rr_tb_smoking

2.6

lin2007_dcp3

10

rr_tb_pollution

1.5

lin2007_dcp3

11

rel_infectiousness_hiv

0.68

juan

12

annual_rate_self_cure_old_value

0.2

0.016666666666666666

0.01652854617838251

dye_1998_lancet

13

annual_rate_self_cure

0.33

Tiemersma

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3070694/

14

tb_mortality_rate

0.15

0.012499999999999999

0.012422199506118559

juan

15

tb_mortality_hiv_rate

0.84

0.06999999999999999

0.06760618009405173

juan

16

prop_mdr2010

0.0186

abouyannis

17

prop_mdr_new

0.075

who2017reports

18

prop_mdr_retreated

0.064

who2017reports

19

rate_relapse_tx_complete

0.032

0.0026666666666666666

0.002663114269499056

juan_tableparams

20

rate_relapse_tx_incomplete

0.14

0.011666666666666667

0.011598875001476161

juan_tableparams

21

rate_relapse_2yrs

0.0015

0.000125

0.00012499218782546784

juan_tableparams

followup

ds_sputum

ds_clinical_monitor

ds_retreatment_sputum

ds_retreatment_clinical

mdr_sputum

mdr_clinical_monitor

shine_sputum

shine_clinical_monitor

0

2

1

3

1

2

1

2

1

1

5

2

5

2

5

2

4

2

2

6

3

8

3

6

3

3

3

4

4

8

4

4

4

5

5

10

5

5

6

6

12

6

6

7

14

7

7

8

16

8

8

18

9

9

20

10

10

22

11

11

24

12

12

13

13

14

14

15

15

16

16

17

17

18

18

19

19

20

20

21

21

22

22

23

23

24

latent_TB2014_summary

Age_group

latent_TB_prev

lower_estimate

upper_estimate

population_size2016

proportion_latent_TB

proportion_latent_TB_lower

proportion_latent_TB_upper

0

0_14

525000

476000

567000

7847053

0.0669041

0.0606597151822474

0.07225642543767705

1

15_80

2645000

9726553

0.271936

2

0_80

3170000

2850000

3720000

17573606

0.180384

0.16217502543302723

0.2116810858283724

WHO_activeTB2023

year

bcg_coverage

incidence_per_100k

incidence_per_100k_low

incidence_per_100k_high

percentage_tb_with_hiv

percentage_tb_with_hiv_low

percentage_tb_with_hiv_high

mortality_tb_excl_hiv_per_100k

mortality_tb_excl_hiv_per_100k_low

mortality_tb_excl_hiv_per_100k_high

mortality_tb_hiv_per_100k

mortality_tb_hiv_per_100k_low

mortality_tb_hiv_per_100k_high

total_mortality_tb_per_100k

total_mortality_tb_per_100k_low

total_mortality_tb_per_100k_high

num_deaths_tb_nonHiv

num_deaths_tb_nonHiv_low

num_deaths_tb_nonHiv_high

prevalence_all_ages

prevalence_all_ages_low

prevalence_all_ages_high

case_detection_rate

case_detection_rate_lower

case_detection_rate_upper

TB_program_tx_coverage

case_fatality_rate

case_fatality_rate_low

case_fatality_rate_high

0

2000

83

386

43

1100

79

65

91

20

6.1

43

116

60

191

137

77

213

2300

680

4900

0.003955636395089666

0.0022854788060518074

0.0059774061081354956

54

19

490

0.54

0.05

0.97

1

2001

93

395

40

1140

77

53

94

18

3.9

43

116

59

192

134

73

213

2100

450

4900

0.003933014605249737

0.0023085085726465846

0.005985022225380034

57

20

560

0.53

0.05

0.97

2

2002

78

401

39

1170

71

53

86

29

9.5

58

113

56

190

142

79

223

3400

1100

6900

0.003995434882693616

0.002413908574960726

0.00590991409731764

52

18

540

0.56

0.04

0.98

3

2003

91

403

38

1190

68

49

84

27

9.3

55

100

49

168

127

71

199

3300

1100

6600

0.003971892940138629

0.0024317711878399768

0.005917309890410611

58

20

610

0.5

0.06

0.94

4

2004

97

402

39

1180

67

47

83

30

10

60

105

51

178

135

75

212

3700

1300

7500

0.003944450150748996

0.0024455590934643772

0.005837786223108514

54

18

570

0.53

0.05

0.97

5

2005

99

398

40

1160

67

47

84

31

10

63

111

54

190

143

79

225

4000

1300

8000

0.003987818441681721

0.0024540421179579824

0.005828350030150208

50

17

510

0.56

0.04

0.99

6

2006

99

392

41

1130

70

69

70

27

14

46

119

65

189

146

89

218

3600

1800

6000

0.003946605554348407

0.002457320439499952

0.005733747692166554

49

17

460

0.58

0.04

0.99

7

2007

95

383

43

1080

68

68

69

29

15

48

116

63

185

145

89

215

3900

2000

6500

0.0038292116686338942

0.002384226133300349

0.005635443587800825

47

17

420

0.58

0.05

0.99

8

2008

97

371

47

1020

63

50

75

33

14

60

105

54

173

138

82

209

4600

2000

8300

0.003713764345816206

0.002312343837961034

0.005465539980635171

46

17

370

0.55

0.05

0.98

9

2009

95

356

50

952

64

64

65

32

16

53

106

58

170

138

85

204

4500

2300

7500

0.003533904620729803

0.002174710535833725

0.0052328972268499

45

17

310

0.56

0.06

0.98

10

2010

97

338

55

870

77

53

94

20

4.2

48

125

61

211

145

77

233

3000

620

7100

0.0032966101946351623

0.0019779661167810977

0.005010847495845447

42

16

260

0.6

0.04

1

11

2011

99

316

61

777

60

59

60

34

17

57

93

50

149

127

79

186

5100

2600

8600

0.003135474644952289

0.0017916997971155937

0.004799195885131054

40

16

210

0.54

0.07

0.96

12

2012

99

291

67

675

59

59

60

29

15

49

79

42

127

108

67

158

4600

2300

7600

0.0029197433980408523

0.001677299398874532

0.004597042796915384

45

19

190

47

0.48

0.09

0.89

13

2013

96

261

73

567

56

55

57

30

15

50

69

37

112

99

62

145

4700

2400

7900

0.002593932478248519

0.0013874522558073473

0.0042226807785441

42

20

150

44

0.47

0.11

0.86

14

2014

97

228

78

455

54

53

55

27

13

45

57

31

92

84

53

122

4400

2200

7400

0.002284865554409738

0.0012303122216052434

0.0036323503685488138

43

22

130

45

0.44

0.12

0.78

15

2015

90

197

81

364

53

52

54

22

11

37

46

25

74

68

43

99

3700

1900

6200

0.0019347194915648222

0.0010242632602402

0.003129693295178389

47

26

110

50

0.39

0.13

0.69

16

2016

86

176

81

307

53

52

53

19

9.5

31

38

20

61

57

36

82

3300

1700

5400

0.0016029560720943312

0.0008291152097039644

0.0025426199764254907

51

29

110

58

0.36

0.14

0.62

17

2017

89

162

80

272

49

49

50

16

8.3

27

29

16

47

46

29

65

2900

1500

4800

0.0012887909980526368

0.0006980951239451783

0.002094285371835535

57

34

120

71

0.31

0.13

0.52

18

2018

92

153

79

250

48

48

49

16

8.2

27

28

15

44

44

28

63

3000

1500

4900

56

34

110

0.31

0.13

0.52

19

2019

146

78

235

47

46

47

14

7.3

23

23

12

36

37

24

53

2700

1400

4400

61

38

110

0.27

0.12

0.45

20

2020

138

73

225

45

44

45

16

7.9

26

24

13

38

40

26

57

3000

1500

5100

56

35

110

0.31

0.14

0.52

21

2021

132

67

218

45

44

46

15

7.3

26

24

13

39

39

25

57

3000

1500

5100

55

33

110

0.32

0.13

0.55

22

2022

125

61

212

48

48

49

9.5

4.6

16

18

9.4

28

27

17

39

1900

930

3300

71

42

150

0.24

0.1

0.42

23

2023

24

2024

25

2025

26

2026

27

2027

28

2028

29

2029

30

2030

31

2031

32

2032

33

2033

34

2034

35

2035

36

2036

37

2037

38

2038

39

2039

40

2040

41

2041

42

2042

43

2043

44

2044

45

2045

46

2046

47

2047

48

2048

49

2049

50

2050

WHO_latentTB2017

variable

definition

value

0

year

2017

1

source_hh

Source of estimate of average household size

DHS 2015

2

e_hh_size

Estimated average household size

4.508918

3

prevtx_data_available

Are data available on the number of children aged under 5 who are household contacts of TB cases and started on TB preventive therapy?

60

4

newinc_con04_prevtx

Number of children aged under 5 started on TB preventive therapy who are household contacts of bacteriologically-confirmed new and relapse TB cases notified

3068

5

ptsurvey_newinc

Number of bacteriologically-confirmed TB new and relapse cases notified in the reporting year whose medical records or treatment cards were included in a survey

6

ptsurvey_newinc_con04_prevtx

Number of children aged under 5 started on TB preventive therapy who are household contacts of the TB cases in ptsurvey_newinc

7

e_prevtx_eligible

Estimated number of children aged under 5 who are household contacts of TB cases who are eligible for TB preventive therapy

4400

8

e_prevtx_eligible_hi

Estimated number of children aged under 5 who are household contacts of TB cases who are eligible for TB preventive therapy: high bound

4000

9

e_prevtx_eligible_lo

Estimated number of children aged under 5 who are household contacts of TB cases who are eligible for TB preventive therapy: low bound

4800

10

e_prevtx_kids_pct

Estimated % of children received TB preventive therapy aged under 5 who are household contacts of TB cases and who are eligible for TB preventive therapy

69

11

e_prevtx_kids_pct_hi

Estimated % of children received TB preventive therapy aged under 5 who are household contacts of TB cases and who are eligible for TB preventive therapy: High bound

64

12

e_prevtx_kids_pct_lo

Estimated % of children received TB preventive therapy aged under 5 who are household contacts of TB cases and who are eligible for TB preventive therapy: Low bound

76

WHO_mdrTB2017

variable

definition

value

0

year

2017

1

source_rr_new

Method used to estimate proportion of new TB patients with rifampicin-resistant TB

Survey

2

source_drs_coverage_new

Indicates whether national or subnational data from drug resistance surveys or surveillance was used to estimate the proportion of new TB cases with MDR-TB

National

3

source_drs_year_new

Year of drug resistance surveillance, survey or model used to estimate proportion of new TB cases with MDR-TB

2011

4

e_rr_pct_new

Estimated percentage of new TB cases with rifampicin resistant TB

0.75

5

e_rr_pct_new_hi

Estimated percentage of new TB cases with rifampicin resistant TB: high bound

0.16

6

e_rr_pct_new_lo

Estimated percentage of new TB cases with rifampicin resistant TB: low bound

1.8

7

e_mdr_pct_rr_new

Estimated percentage of new rifampicin resistant TB cases that have MDR-TB

56

8

source_rr_ret

Method used to estimate proportion of previously treated TB patients with rifampicin-resistant TB

Survey

9

source_drs_coverage_ret

Indicates whether national or subnational data from drug resistance surveys or surveillance was used to estimate the proportion of previously treated TB cases with MDR-TB

National

10

source_drs_year_ret

Year of drug resistance surveillance, survey or model used to estimate proportion of previously treated TB cases with MDR-TB

2011

11

e_rr_pct_ret

Estimated percentage of previously treated TB cases with rifampicin resistant TB

6.4

12

e_rr_pct_ret_hi

Estimated percentage of previously treated TB cases with rifampicin resistant TB: high bound

4

13

e_rr_pct_ret_lo

Estimated percentage of previously treated TB cases with rifampicin resistant TB: low bound

9.2

14

e_mdr_pct_rr_ret

Estimated percentage of previously treated rifampicin resistant TB cases that have MDR-TB

76

15

e_inc_rr_num

Estimated incidence of rifampicin resistant TB (absolute number)

330

16

e_inc_rr_num_hi

Estimated incidence of rifampicin resistant TB (absolute number): high bound

90

17

e_inc_rr_num_lo

Estimated incidence of rifampicin resistant TB (absolute number): low bound

710

18

e_mdr_pct_rr

Estimated percentage of rifampicin resistant TB cases that have MDR-TB

63

19

e_rr_in_notified_pulm

Estimated number of RR-TB cases among notified pulmonary TB cases

180

20

e_rr_in_notified_pulm_hi

Estimated number of RR-TB cases among notified pulmonary TB cases: high bound

83

21

e_rr_in_notified_pulm_lo

Estimated number of RR-TB cases among notified pulmonary TB cases: low bound

270

WHO_tx_success_rates2021

year

Are outcomes of relapse cases included in the newrel outcome variables?

Outcomes for all new and relapse cases (but only new cases if rel_with_new_flg = 0): cohort size

Outcomes for all new and relapse cases (but only new cases if rel_with_new_flg = 0): treatment success (cured or treatment completed)

Outcomes for all new and relapse cases (but only new cases if rel_with_new_flg = 0): treatment failed

Outcomes for all new and relapse cases (but only new cases if rel_with_new_flg = 0): died

Outcomes for all new and relapse cases (but only new cases if rel_with_new_flg = 0): lost to follow-up

Treatment success rate for all new cases (including relapse cases if rel_with_new_flg = 1), percent

Outcomes for previously treated patients (excluding relapse cases if rel_with_new_flg = 1): cohort size

Outcomes for previously treated patients (excluding relapse cases if rel_with_new_flg = 1): treatment success (cured or treatment completed)

Outcomes for previously treated patients (excluding relapse cases if rel_with_new_flg = 1): treatment failed

Outcomes for previously treated patients (excluding relapse cases if rel_with_new_flg = 1): died

Outcomes for previously treated patients (excluding relapse cases if rel_with_new_flg = 1): lost to follow-up

Treatment success rate for re-treatment cases (excluding relapse cases if rel_with_new_flg = 1), percent

Outcomes for HIV-positive TB cases, all types: cohort size

Outcomes for HIV-positive TB cases, all types: treatment success (cured or treatment completed)

Outcomes for HIV-positive TB cases, all types: treatment failed

Outcomes for HIV-positive TB cases, all types: died

Outcomes for HIV-positive TB cases, all types: lost to follow-up

Treatment success rate for HIV-positive TB cases, percent

Outcomes for new and relapse cases in children aged 0-14 years: cohort size

Outcomes for new and relapse cases in children aged 0-14 years: treatment success

Outcomes for new and relapse cases in children aged 0-14 years: treatment failed

Outcomes for new and relapse cases in children aged 0-14 years: died

Outcomes for new and relapse cases in children aged 0-14 years: lost to follow-up

Treatment success rate for new and relapse cases in children aged 0-14 years, percent

Outcomes for MDR-TB cases: cohort size

Outcomes for MDR-TB cases: treatment success (Cured or treatment completed)

Outcomes for MDR-TB cases: treatment failed

Outcomes for MDR-TB cases: died

Outcomes for MDR-TB cases: lost to follow-up

0

2010

83

77

26

18

2

5

1

1

2011

83

82

16

11

4

1

2

2012

1

19361

15849

159

2015

292

82

1493

847

8

136

8

57

19

12

0

6

1

3

2013

1

17779

14506

139

1710

312

82

19

10

0

7

1

4

2014

1

16267

13867

148

1414

332

85

1456

1086

8

152

30

75

53

31

0

18

2

5

2015

1

15597

12585

164

1576

358

81

1284

977

9

218

32

76

7799

6320

92

959

108

81

64

39

0

21

3

6

2016

1

15683

12877

153

1590

311

82

1023

828

11

130

14

81

7804

6244

101

938

121

80

58

34

1

17

5

7

2017

1

16321

14003

104

1586

266

86

352

281

9

37

11

80

7763

6498

67

938

117

84

58

32

1

20

4

8

2018

1

15435

13522

140

1286

246

88

321

259

13

21

19

81

7268

6222

81

790

73

86

1183

1096

93

NTP2019

year

case_notification_rate_per_100k

treatment_coverage

treatment_success_rates

death_rate

percent_hiv_positive

number_notified_mdr_cases

percent_mdr_treatment_success

percent_death_mdr_cases

coverage_ipt_paediatric_contacts

0

2010

1

2011

46

82.7

10.7

2

2012

138

51

81.8

10.7

27

63.2

31.6

3

2013

126

48

83.3

9.8

91

52.6

36.8

4

2014

112

46

85

8.9

106

58.6

34

35

5

2015

105

46

81.6

10.6

42.6

107

60.9

32.8

42

6

2016

101

47

82.1

10.3

38.8

66

58.6

29.3

51

7

2017

95

50

86

9.7

39.1

85

55

35

61

8

2018

88

48

87.2

8.6

38.5

126

68.8

17

57

9

2019

92

51

87.6

8.2

35.5

104

73

16

57

10

2020

76

56

89

8

45

97

76

48

11

2021

41