TB (.xlsx) ========== :download:`Download original .xlsx file from GitHub ` .. contents:: parameters ---------- ==== ====================================== =================== ================== ======= ================ .. parameter\_name value lower upper notes ==== ====================================== =================== ================== ======= ================ 0 scaling\_factor\_WHO 1.60303 1 prop\_mdr2010 0.0186 2 rr\_bcg\_inf 0.81 3 monthly\_prob\_relapse\_tx\_complete 0.0027 0.0014 0.00405 4 monthly\_prob\_relapse\_tx\_incomplete 0.0116 0.0058 0.0174 5 monthly\_prob\_relapse\_2yrs 0.0001 5e-05 0.0015 6 rr\_relapse\_hiv 4.7 7 duration\_active\_disease\_years 3 8 prop\_smear\_positive 0.62 0.42 0.8 9 prop\_smear\_positive\_hiv 0.35 0.19 0.54 10 death\_rate\_child0\_4\_treated 0.05 11 death\_rate\_child5\_14\_treated 0.06 12 death\_rate\_adult\_treated 0.107 changed from 0.086 13 death\_rate\_smear\_pos\_untreated 0.7 14 death\_rate\_smear\_neg\_untreated 0.2 15 rr\_tb\_child 0.1 assumed 16 rr\_tb\_bcg 0.42 17 rr\_tb\_hiv 5 assumed 20.6getahun2010 18 rr\_tb\_aids 26 assumed 26williams\_pnas 19 rr\_tb\_art\_adult 0.35 20 rr\_tb\_art\_child 0.3 21 rr\_tb\_obese 0.4 22 rr\_tb\_diabetes1 3 23 rr\_tb\_alcohol 2.9 24 rr\_tb\_smoking 1.3 25 rr\_ipt\_adult 0.4 26 rr\_ipt\_child 0.55 27 rr\_ipt\_adult\_hiv 0.68 28 rr\_ipt\_child\_hiv 0.31 29 rr\_ipt\_art\_child 0.76 30 rr\_ipt\_art\_adult 0.63 31 sens\_xpert\_smear\_negative 0.68 32 sens\_xpert\_smear\_positive 0.98 33 spec\_xpert\_smear\_negative 0.99 34 spec\_xpert\_smear\_positive 0.99 35 sens\_sputum\_smear\_positive 1 36 spec\_sputum\_smear\_positive 1 37 sens\_clinical 0.209 0.12 0.33 38 spec\_clinical 0.953 0.92 0.97 39 sens\_xray\_smear\_negative 0.8 40 sens\_xray\_smear\_positive 0.91 41 spec\_xray\_smear\_negative 0.67 42 spec\_xray\_smear\_positive 0.67 43 prob\_tx\_success\_ds 0.837 44 prob\_tx\_success\_mdr 0.597 45 prob\_tx\_success\_0\_4 0.94 46 prob\_tx\_success\_5\_14 0.92 47 prob\_tx\_success\_shorter 0.92 48 rate\_testing\_general\_pop 0.025 49 ds\_treatment\_length 6 50 ds\_retreatment\_length 8 51 mdr\_treatment\_length 24 52 child\_shorter\_treatment\_length 4 53 prob\_retained\_ipt\_6\_months 0.9 54 age\_eligibility\_for\_ipt 5 55 ipt\_start\_date 2014 56 scenario 0 57 scenario\_start\_date 2023-01-01 00:00:00 58 first\_line\_test sputum 59 second\_line\_test xpert 60 probability\_access\_to\_xray 0.1 ==== ====================================== =================== ================== ======= ================ scaleup_parameters ------------------ ==== ============================================================ ======= .. parameter value ==== ============================================================ ======= 0 hiv\_beta 0.9 1 prob\_prep\_for\_fsw\_after\_hiv\_test 0.5 2 prob\_prep\_for\_agyw 0.1 3 probability\_of\_being\_retained\_on\_prep\_every\_3\_months 0.75 4 prob\_circ\_after\_hiv\_test 0.25 5 annual\_testing\_rate\_children 0.1 6 annual\_testing\_rate\_adults 0.3 7 prob\_hiv\_test\_at\_anc\_or\_delivery 0.95 8 prob\_hiv\_test\_for\_newborn\_infant 0.95 9 prob\_start\_art\_after\_hiv\_test 0.95 10 virally\_suppressed\_on\_art 95 11 tb\_treatment\_coverage 90 12 tb\_prob\_tx\_success\_ds 0.9 13 tb\_prob\_tx\_success\_mdr 0.9 14 tb\_prob\_tx\_success\_0\_4 0.9 15 tb\_prob\_tx\_success\_5\_14 0.9 16 tb\_prob\_tx\_success\_shorter 0.9 17 first\_line\_test xpert 18 second\_line\_test sputum 19 ipt\_coverage\_plhiv 0.9 20 ipt\_coverage\_paediatric 90 ==== ============================================================ ======= calibrated_transmission_rates ----------------------------- ==== ====== ======== ======= ========== .. draw hiv tb deviance ==== ====== ======== ======= ========== 0 1 0.125176 16.7101 0.814946 1 12 0.121988 18.0221 0.83383 2 0 0.10922 15.8241 0.862322 3 9 0.115698 19.2184 0.92932 4 16 0.13272 15.4037 0.96256 ==== ====== ======== ======= ========== IPTdistricts ------------ ==== ================ ======== .. district\_name region ==== ================ ======== 0 Lilongwe City central 1 Blantyre southern 2 Mangochi southern 3 Machinga southern 4 Chikwawa southern 5 Mzimba northern 6 Thyolo southern 7 Mulanje southern 8 Nsanje southern 9 Chiradzulu southern ==== ================ ======== all_districts ------------- ==== ================ .. district\_name ==== ================ 0 Balaka 1 Blantyre 2 Blantyre City 3 Chikwawa 4 Chiradzulu 5 Chitipa 6 Dedza 7 Dowa 8 Karonga 9 Kasungu 10 Likoma 11 Lilongwe 12 Lilongwe City 13 Machinga 14 Mangochi 15 Mchinji 16 Mulanje 17 Mwanza 18 Mzimba 19 Mzuzu City 20 Neno 21 Nkhata Bay 22 Nkhotakota 23 Nsanje 24 Ntcheu 25 Ntchisi 26 Phalombe 27 Rumphi 28 Salima 29 Thyolo 30 Zomba 31 Zomba City ==== ================ ipt_coverage ------------ ==== ====== ================= ================= ====================== ========= .. year coverage\_plhiv source coverage\_paediatric source2 ==== ====== ================= ================= ====================== ========= 0 2010 0 not\_implemented 0 1 2011 0 not\_implemented 0 2 2012 0 not\_implemented 0 3 2013 0 not\_implemented 0 4 2014 0 not\_implemented 35 NTP2019 5 2015 0 not\_implemented 42 NTP2019 6 2016 0 not\_implemented 51 NTP2019 7 2017 0 not\_implemented 61 NTP2019 8 2018 0.31 MoH\_quart\_repQ1 57 NTP2019 9 2019 0.3 MoH\_quart\_repQ2 57 10 2020 0.11 MoH\_quart\_repQ3 57 11 2021 0.3 no\_data 57 12 2022 0.3 no\_data 57 13 2023 0.3 no\_data 57 14 2024 0.3 no\_data 57 15 2025 0.3 no\_data 57 16 2026 0.3 no\_data 57 17 2027 0.3 no\_data 57 18 2028 0.3 no\_data 57 19 2029 0.3 no\_data 57 20 2030 0.3 no\_data 57 21 2031 0.3 no\_data 57 22 2032 0.3 no\_data 57 23 2033 0.3 no\_data 57 24 2034 0.3 no\_data 57 25 2035 0.3 no\_data 57 26 2036 0.3 no\_data 57 27 2037 0.3 no\_data 57 28 2038 0.3 no\_data 57 29 2039 0.3 no\_data 57 30 2040 0.3 no\_data 57 31 2041 0.3 no\_data 57 32 2042 0.3 no\_data 57 33 2043 0.3 no\_data 57 34 2044 0.3 no\_data 57 35 2045 0.3 no\_data 57 36 2046 0.3 no\_data 57 37 2047 0.3 no\_data 57 38 2048 0.3 no\_data 57 39 2049 0.3 no\_data 57 40 2050 0.3 no\_data 57 ==== ====== ================= ================= ====================== ========= testing_rates ------------- ==== ====== ============================== ===================== ================================= .. year testing\_rate\_active\_cases treatment\_coverage source ==== ====== ============================== ===================== ================================= 0 2010 45 45 assumed 1 2011 45 45 assumed 2 2012 47 47 who\_reports\_treatment\_coverage 3 2013 44 44 who\_reports\_treatment\_coverage 4 2014 45 45 who\_reports\_treatment\_coverage 5 2015 50 50 who\_reports\_treatment\_coverage 6 2016 58 58 who\_reports\_treatment\_coverage 7 2017 71 71 who\_reports\_treatment\_coverage 8 2018 75 75 assumed 9 2019 75 75 assumed 10 2020 75 75 assumed 11 2021 75 75 assumed 12 2022 75 75 assumed 13 2023 75 75 assumed 14 2024 75 75 assumed 15 2025 75 75 assumed 16 2026 75 75 assumed 17 2027 75 75 assumed 18 2028 75 75 assumed 19 2029 75 75 assumed 20 2030 75 75 assumed 21 2031 75 75 assumed 22 2032 75 75 assumed 23 2033 75 75 assumed 24 2034 75 75 assumed 25 2035 75 75 assumed 26 2036 75 75 assumed 27 2037 75 75 assumed 28 2038 75 75 assumed 29 2039 75 75 assumed 30 2040 75 75 assumed 31 2041 75 75 assumed 32 2042 75 75 assumed 33 2043 75 75 assumed 34 2044 75 75 assumed 35 2045 75 75 assumed 36 2046 75 75 assumed 37 2047 75 75 assumed 38 2048 75 75 assumed 39 2049 75 75 assumed 40 2050 75 75 assumed ==== ====== ============================== ===================== ================================= pulm_tb ------- ==== ===== ===== ============ .. age hiv prob\_pulm ==== ===== ===== ============ 0 0 False 0.7 1 1 False 0.74 2 2 False 0.91 3 3 False 0.91 4 4 False 0.91 5 5 False 0.89 6 6 False 0.89 7 7 False 0.89 8 8 False 0.89 9 9 False 0.89 10 10 False 0.99 11 11 False 0.99 12 12 False 0.99 13 13 False 0.99 14 14 False 0.99 15 15 False 0.8 16 16 False 0.8 17 17 False 0.8 18 18 False 0.8 19 19 False 0.8 20 20 False 0.8 21 21 False 0.8 22 22 False 0.8 23 23 False 0.8 24 24 False 0.8 25 25 False 0.8 26 26 False 0.8 27 27 False 0.8 28 28 False 0.8 29 29 False 0.8 30 30 False 0.8 31 31 False 0.8 32 32 False 0.8 33 33 False 0.8 34 34 False 0.8 35 35 False 0.8 36 36 False 0.8 37 37 False 0.8 38 38 False 0.8 39 39 False 0.8 40 40 False 0.8 41 41 False 0.8 42 42 False 0.8 43 43 False 0.8 44 44 False 0.8 45 45 False 0.8 46 46 False 0.8 47 47 False 0.8 48 48 False 0.8 49 49 False 0.8 50 50 False 0.8 51 51 False 0.8 52 52 False 0.8 53 53 False 0.8 54 54 False 0.8 55 55 False 0.8 56 56 False 0.8 57 57 False 0.8 58 58 False 0.8 59 59 False 0.8 60 60 False 0.8 61 61 False 0.8 62 62 False 0.8 63 63 False 0.8 64 64 False 0.8 65 65 False 0.8 66 66 False 0.8 67 67 False 0.8 68 68 False 0.8 69 69 False 0.8 70 70 False 0.8 71 71 False 0.8 72 72 False 0.8 73 73 False 0.8 74 74 False 0.8 75 75 False 0.8 76 76 False 0.8 77 77 False 0.8 78 78 False 0.8 79 79 False 0.8 80 80 False 0.8 81 81 False 0.8 82 82 False 0.8 83 83 False 0.8 84 84 False 0.8 85 85 False 0.8 86 86 False 0.8 87 87 False 0.8 88 88 False 0.8 89 89 False 0.8 90 90 False 0.8 91 91 False 0.8 92 92 False 0.8 93 93 False 0.8 94 94 False 0.8 95 95 False 0.8 96 96 False 0.8 97 97 False 0.8 98 98 False 0.8 99 99 False 0.8 100 100 False 0.8 101 0 True 0.5 102 1 True 0.5 103 2 True 0.5 104 3 True 0.5 105 4 True 0.5 106 5 True 0.5 107 6 True 0.5 108 7 True 0.5 109 8 True 0.5 110 9 True 0.5 111 10 True 0.5 112 11 True 0.5 113 12 True 0.5 114 13 True 0.5 115 14 True 0.5 116 15 True 0.5 117 16 True 0.5 118 17 True 0.5 119 18 True 0.5 120 19 True 0.5 121 20 True 0.5 122 21 True 0.5 123 22 True 0.5 124 23 True 0.5 125 24 True 0.5 126 25 True 0.5 127 26 True 0.5 128 27 True 0.5 129 28 True 0.5 130 29 True 0.5 131 30 True 0.5 132 31 True 0.5 133 32 True 0.5 134 33 True 0.5 135 34 True 0.5 136 35 True 0.5 137 36 True 0.5 138 37 True 0.5 139 38 True 0.5 140 39 True 0.5 141 40 True 0.5 142 41 True 0.5 143 42 True 0.5 144 43 True 0.5 145 44 True 0.5 146 45 True 0.5 147 46 True 0.5 148 47 True 0.5 149 48 True 0.5 150 49 True 0.5 151 50 True 0.5 152 51 True 0.5 153 52 True 0.5 154 53 True 0.5 155 54 True 0.5 156 55 True 0.5 157 56 True 0.5 158 57 True 0.5 159 58 True 0.5 160 59 True 0.5 161 60 True 0.5 162 61 True 0.5 163 62 True 0.5 164 63 True 0.5 165 64 True 0.5 166 65 True 0.5 167 66 True 0.5 168 67 True 0.5 169 68 True 0.5 170 69 True 0.5 171 70 True 0.5 172 71 True 0.5 173 72 True 0.5 174 73 True 0.5 175 74 True 0.5 176 75 True 0.5 177 76 True 0.5 178 77 True 0.5 179 78 True 0.5 180 79 True 0.5 181 80 True 0.5 182 81 True 0.5 183 82 True 0.5 184 83 True 0.5 185 84 True 0.5 186 85 True 0.5 187 86 True 0.5 188 87 True 0.5 189 88 True 0.5 190 89 True 0.5 191 90 True 0.5 192 91 True 0.5 193 92 True 0.5 194 93 True 0.5 195 94 True 0.5 196 95 True 0.5 197 96 True 0.5 198 97 True 0.5 199 98 True 0.5 200 99 True 0.5 201 100 True 0.5 ==== ===== ===== ============ additional_params ----------------- ==== =================== ===== .. prop\_pulm 0.8 ==== =================== ===== 0 prop\_pulm\_hiv 0.5 1 prop\_pulm\_1yr 0.7 2 prop\_pulm\_1\_2yr 0.74 3 prop\_pulm\_2\_5yr 0.91 4 prop\_pulm\_5\_10yr 0.89 5 prop\_pulm\_10yr 0.99 6 rr\_tbm\_bcg 0.27 7 rr\_miliary\_bcg 0.23 ==== =================== ===== cases2010district ----------------- ==== ============= ======== ============= ======= ==================== ============ ============ =============== .. district region cases\_2010 pop proportion\_active all\_cases whole\_pop general\_prob ==== ============= ======== ============= ======= ==================== ============ ============ =============== 0 Balaka Southern 1563 438379 0.00356541 50000 17563749 0.00284677 1 Blantyre Southern 1563 451220 0.00346394 50000 17563749 0.00284677 2 Blantyre City Southern 1563 800264 0.00195311 50000 17563749 0.00284677 3 Chikwawa Southern 1563 564684 0.00276792 50000 17563749 0.00284677 4 Chiradzulu Southern 1563 356875 0.00437968 50000 17563749 0.00284677 5 Chitipa Northern 1563 234927 0.00665313 50000 17563749 0.00284677 6 Dedza Central 1563 830512 0.00188197 50000 17563749 0.00284677 7 Dowa Central 1563 772569 0.00202312 50000 17563749 0.00284677 8 Karonga Northern 1563 365028 0.00428186 50000 17563749 0.00284677 9 Kasungu Central 1563 842953 0.0018542 50000 17563749 0.00284677 10 Likoma Northern 1563 14527 0.107593 50000 17563749 0.00284677 11 Lilongwe Central 1563 1637583 0.000954455 50000 17563749 0.00284677 12 Lilongwe City Central 1563 989318 0.00157988 50000 17563749 0.00284677 13 Machinga Southern 1563 735438 0.00212526 50000 17563749 0.00284677 14 Mangochi Southern 1563 1148611 0.00136077 50000 17563749 0.00284677 15 Mchinji Central 1563 602305 0.00259503 50000 17563749 0.00284677 16 Mulanje Southern 1563 684107 0.00228473 50000 17563749 0.00284677 17 Mwanza Southern 1563 130949 0.0119359 50000 17563749 0.00284677 18 Mzimba Northern 1563 936250 0.00166943 50000 17563749 0.00284677 19 Mzuzu City Northern 1563 221272 0.0070637 50000 17563749 0.00284677 20 Neno Southern 1563 138291 0.0113023 50000 17563749 0.00284677 21 Nkhata Bay Northern 1563 285795 0.00546896 50000 17563749 0.00284677 22 Nkhotakota Central 1563 395897 0.003948 50000 17563749 0.00284677 23 Nsanje Southern 1563 299168 0.00522449 50000 17563749 0.00284677 24 Ntcheu Central 1563 659608 0.00236959 50000 17563749 0.00284677 25 Ntchisi Central 1563 317069 0.00492953 50000 17563749 0.00284677 26 Phalombe Southern 1563 429450 0.00363954 50000 17563749 0.00284677 27 Rumphi Northern 1563 229161 0.00682053 50000 17563749 0.00284677 28 Salima Central 1563 478346 0.00326751 50000 17563749 0.00284677 29 Thyolo Southern 1563 721456 0.00216645 50000 17563749 0.00284677 30 Zomba Southern 1563 746724 0.00209314 50000 17563749 0.00284677 31 Zomba City Southern 1563 105013 0.0148839 50000 17563749 0.00284677 ==== ============= ======== ============= ======= ==================== ============ ============ =============== details_rates ------------- ==== ===================================== ======== ======== ======== ======== ===================== ====================== ============ ================== ===================================================== .. parameter value1 value2 value3 value4 monthly\_rate monthly\_probability Unnamed: 7 source Unnamed: 9 ==== ===================================== ======== ======== ======== ======== ===================== ====================== ============ ================== ===================================================== 0 prop\_fast\_progressor 0.14 vynnycky 1 transmission\_rate 4.9 juan 2 annual\_progression\_to\_active\_rate 0.05 0.004166666666666667 0.004157998154890041 horsburgh 3 rr\_tb\_with\_hiv\_stages 3.44 6.76 13.28 26.06 williams\_pnas2010 4 rr\_tb\_art 0.35 suthar\_juan 5 rr\_tb\_ipt 0.63 rangaka\_juan 6 rr\_tb\_malnourished 2.1 lonroth2010\_dcp3 7 rr\_tb\_diabetes1 3 joen2008\_dcp3 8 rr\_tb\_alcohol 2.9 lonroth2008\_dcp3 9 rr\_tb\_smoking 2.6 lin2007\_dcp3 10 rr\_tb\_pollution 1.5 lin2007\_dcp3 11 rel\_infectiousness\_hiv 0.68 juan 12 annual\_rate\_self\_cure\_old\_value 0.2 0.016666666666666666 0.01652854617838251 dye\_1998\_lancet 13 annual\_rate\_self\_cure 0.33 Tiemersma https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3070694/ 14 tb\_mortality\_rate 0.15 0.012499999999999999 0.012422199506118559 juan 15 tb\_mortality\_hiv\_rate 0.84 0.06999999999999999 0.06760618009405173 juan 16 prop\_mdr2010 0.0186 abouyannis 17 prop\_mdr\_new 0.075 who2017reports 18 prop\_mdr\_retreated 0.064 who2017reports 19 rate\_relapse\_tx\_complete 0.032 0.0026666666666666666 0.002663114269499056 juan\_tableparams 20 rate\_relapse\_tx\_incomplete 0.14 0.011666666666666667 0.011598875001476161 juan\_tableparams 21 rate\_relapse\_2yrs 0.0015 0.000125 0.00012499218782546784 juan\_tableparams ==== ===================================== ======== ======== ======== ======== ===================== ====================== ============ ================== ===================================================== followup -------- ==== ============ ======================= ========================= =========================== ============= ======================== =============== ========================== .. ds\_sputum ds\_clinical\_monitor ds\_retreatment\_sputum ds\_retreatment\_clinical mdr\_sputum mdr\_clinical\_monitor shine\_sputum shine\_clinical\_monitor ==== ============ ======================= ========================= =========================== ============= ======================== =============== ========================== 0 2 1 3 1 2 1 2 1 1 5 2 5 2 5 2 4 2 2 6 3 8 3 6 3 3 3 4 4 8 4 4 4 5 5 10 5 5 6 6 12 6 6 7 14 7 7 8 16 8 8 18 9 9 20 10 10 22 11 11 24 12 12 13 13 14 14 15 15 16 16 17 17 18 18 19 19 20 20 21 21 22 22 23 23 24 ==== ============ ======================= ========================= =========================== ============= ======================== =============== ========================== latent_TB2014_summary --------------------- ==== ============ ================== ================= ================= ====================== ======================== =============================== =============================== .. Age\_group latent\_TB\_prev lower\_estimate upper\_estimate population\_size2016 proportion\_latent\_TB proportion\_latent\_TB\_lower proportion\_latent\_TB\_upper ==== ============ ================== ================= ================= ====================== ======================== =============================== =============================== 0 0\_14 525000 476000 567000 7847053 0.0669041 0.0606597151822474 0.07225642543767705 1 15\_80 2645000 9726553 0.271936 2 0\_80 3170000 2850000 3720000 17573606 0.180384 0.16217502543302723 0.2116810858283724 ==== ============ ================== ================= ================= ====================== ======================== =============================== =============================== WHO_activeTB2023 ---------------- ==== ====== =============== ====================== =========================== ============================ =========================== ================================ ================================= ===================================== ========================================== =========================================== =============================== ==================================== ===================================== ================================= ====================================== ======================================= ========================= ============================== =============================== ======================= ============================ ============================= ======================= ============================== ============================== =========================== .. year bcg\_coverage incidence\_per\_100k incidence\_per\_100k\_low incidence\_per\_100k\_high percentage\_tb\_with\_hiv percentage\_tb\_with\_hiv\_low percentage\_tb\_with\_hiv\_high mortality\_tb\_excl\_hiv\_per\_100k mortality\_tb\_excl\_hiv\_per\_100k\_low mortality\_tb\_excl\_hiv\_per\_100k\_high mortality\_tb\_hiv\_per\_100k mortality\_tb\_hiv\_per\_100k\_low mortality\_tb\_hiv\_per\_100k\_high total\_mortality\_tb\_per\_100k total\_mortality\_tb\_per\_100k\_low total\_mortality\_tb\_per\_100k\_high num\_deaths\_tb\_nonHiv num\_deaths\_tb\_nonHiv\_low num\_deaths\_tb\_nonHiv\_high prevalence\_all\_ages prevalence\_all\_ages\_low prevalence\_all\_ages\_high case\_detection\_rate case\_detection\_rate\_lower case\_detection\_rate\_upper TB\_program\_tx\_coverage ==== ====== =============== ====================== =========================== ============================ =========================== ================================ ================================= ===================================== ========================================== =========================================== =============================== ==================================== ===================================== ================================= ====================================== ======================================= ========================= ============================== =============================== ======================= ============================ ============================= ======================= ============================== ============================== =========================== 0 2000 83 386 43 1100 79 65 91 20 6.1 43 116 60 191 137 77 213 2000 1900 3000 0.003955636395089666 0.0022854788060518074 0.0059774061081354956 54 18 570 1 2001 93 395 40 1140 77 53 94 18 3.9 43 116 59 192 134 73 213 2000 1700 2000 0.003933014605249737 0.0023085085726465846 0.005985022225380034 50 17 510 2 2002 78 401 39 1170 71 53 86 29 9.5 58 113 56 190 142 79 223 4000 2700 4000 0.003995434882693616 0.002413908574960726 0.00590991409731764 49 17 460 3 2003 91 403 38 1190 68 49 84 27 9.3 55 100 49 168 127 71 199 3000 2700 4000 0.003971892940138629 0.0024317711878399768 0.005917309890410611 47 17 420 4 2004 97 402 39 1180 67 47 83 30 10 60 105 51 178 135 75 212 4000 3000 4000 0.003944450150748996 0.0024455590934643772 0.005837786223108514 46 17 370 5 2005 99 398 40 1160 67 47 84 31 10 63 111 54 190 143 79 225 4000 3100 5000 0.003987818441681721 0.0024540421179579824 0.005828350030150208 45 17 310 6 2006 99 392 41 1130 70 69 70 27 14 46 119 65 189 146 89 218 3000 3500 4000 0.003946605554348407 0.002457320439499952 0.005733747692166554 42 16 260 7 2007 95 383 43 1080 68 68 69 29 15 48 116 63 185 145 89 215 4000 3500 4000 0.0038292116686338942 0.002384226133300349 0.005635443587800825 40 16 210 8 2008 97 371 47 1020 63 50 75 33 14 60 105 54 173 138 82 209 4000 3500 5000 0.003713764345816206 0.002312343837961034 0.005465539980635171 45 19 190 9 2009 95 356 50 952 64 64 65 32 16 53 106 58 170 138 85 204 5000 3800 5000 0.003533904620729803 0.002174710535833725 0.0052328972268499 42 20 150 10 2010 97 338 55 870 77 53 94 20 4.2 48 125 61 211 145 77 233 3000 2000 3000 0.0032966101946351623 0.0019779661167810977 0.005010847495845447 43 22 130 11 2011 99 316 61 777 60 59 60 34 17 57 93 50 149 127 79 186 5000 4500 5000 0.003135474644952289 0.0017916997971155937 0.004799195885131054 47 26 110 12 2012 99 291 67 675 59 59 60 29 15 49 79 42 127 108 67 158 5000 3400 5000 0.0029197433980408523 0.001677299398874532 0.004597042796915384 51 29 110 47 13 2013 96 261 73 567 56 55 57 30 15 50 69 37 112 99 62 145 5000 4000 5000 0.002593932478248519 0.0013874522558073473 0.0042226807785441 57 34 120 44 14 2014 97 228 78 455 54 53 55 27 13 45 57 31 92 84 53 122 4600 3700 5000 0.002284865554409738 0.0012303122216052434 0.0036323503685488138 56 34 110 45 15 2015 90 197 81 364 53 52 54 22 11 37 46 25 74 68 43 99 4200 3100 5000 0.0019347194915648222 0.0010242632602402 0.003129693295178389 61 38 110 50 16 2016 86 176 81 307 53 52 53 19 9.5 31 38 20 61 57 36 82 3300 2700 3000 0.0016029560720943312 0.0008291152097039644 0.0025426199764254907 56 35 110 58 17 2017 89 162 80 272 49 49 50 16 8.3 27 29 16 47 46 29 65 2900 2400 3700 0.0012887909980526368 0.0006980951239451783 0.002094285371835535 55 33 110 71 18 2018 92 153 79 250 48 48 49 16 8.2 27 28 15 44 44 28 63 3000 2400 3900 19 2019 146 78 235 47 46 47 14 7.3 23 23 12 36 37 24 53 2700 2200 3100 20 2020 138 73 225 45 44 45 16 7.9 26 24 13 38 40 26 57 3000 2400 3600 21 2021 132 67 218 45 44 46 15 7.3 26 24 13 39 39 25 57 3000 2400 3300 22 2022 132 67 218 23 2023 132 67 218 24 2024 132 67 218 25 2025 132 67 218 26 2026 132 67 218 27 2027 132 67 218 28 2028 132 67 218 29 2029 132 67 218 30 2030 132 67 218 31 2031 132 67 218 32 2032 132 67 218 33 2033 132 67 218 34 2034 132 67 218 35 2035 132 67 218 36 2036 132 67 218 37 2037 132 67 218 38 2038 132 67 218 39 2039 132 67 218 40 2040 132 67 218 41 2041 132 67 218 42 2042 132 67 218 43 2043 132 67 218 44 2044 132 67 218 45 2045 132 67 218 46 2046 132 67 218 47 2047 132 67 218 48 2048 132 67 218 49 2049 132 67 218 50 2050 132 67 218 ==== ====== =============== ====================== =========================== ============================ =========================== ================================ ================================= ===================================== ========================================== =========================================== =============================== ==================================== ===================================== ================================= ====================================== ======================================= ========================= ============================== =============================== ======================= ============================ ============================= ======================= ============================== ============================== =========================== WHO_latentTB2017 ---------------- ==== =============================== ===================================================================================================================================================================== ======== .. variable definition value ==== =============================== ===================================================================================================================================================================== ======== 0 year 2017 1 source\_hh Source of estimate of average household size DHS 2015 2 e\_hh\_size Estimated average household size 4.508918 3 prevtx\_data\_available Are data available on the number of children aged under 5 who are household contacts of TB cases and started on TB preventive therapy? 60 4 newinc\_con04\_prevtx Number of children aged under 5 started on TB preventive therapy who are household contacts of bacteriologically-confirmed new and relapse TB cases notified 3068 5 ptsurvey\_newinc Number of bacteriologically-confirmed TB new and relapse cases notified in the reporting year whose medical records or treatment cards were included in a survey 6 ptsurvey\_newinc\_con04\_prevtx Number of children aged under 5 started on TB preventive therapy who are household contacts of the TB cases in ptsurvey\_newinc 7 e\_prevtx\_eligible Estimated number of children aged under 5 who are household contacts of TB cases who are eligible for TB preventive therapy 4400 8 e\_prevtx\_eligible\_hi Estimated number of children aged under 5 who are household contacts of TB cases who are eligible for TB preventive therapy: high bound 4000 9 e\_prevtx\_eligible\_lo Estimated number of children aged under 5 who are household contacts of TB cases who are eligible for TB preventive therapy: low bound 4800 10 e\_prevtx\_kids\_pct Estimated % of children received TB preventive therapy aged under 5 who are household contacts of TB cases and who are eligible for TB preventive therapy 69 11 e\_prevtx\_kids\_pct\_hi Estimated % of children received TB preventive therapy aged under 5 who are household contacts of TB cases and who are eligible for TB preventive therapy: High bound 64 12 e\_prevtx\_kids\_pct\_lo Estimated % of children received TB preventive therapy aged under 5 who are household contacts of TB cases and who are eligible for TB preventive therapy: Low bound 76 ==== =============================== ===================================================================================================================================================================== ======== WHO_mdrTB2017 ------------- ==== ============================= ========================================================================================================================================================================== ======== .. variable definition value ==== ============================= ========================================================================================================================================================================== ======== 0 year 2017 1 source\_rr\_new Method used to estimate proportion of new TB patients with rifampicin-resistant TB Survey 2 source\_drs\_coverage\_new Indicates whether national or subnational data from drug resistance surveys or surveillance was used to estimate the proportion of new TB cases with MDR-TB National 3 source\_drs\_year\_new Year of drug resistance surveillance, survey or model used to estimate proportion of new TB cases with MDR-TB 2011 4 e\_rr\_pct\_new Estimated percentage of new TB cases with rifampicin resistant TB 0.75 5 e\_rr\_pct\_new\_hi Estimated percentage of new TB cases with rifampicin resistant TB: high bound 0.16 6 e\_rr\_pct\_new\_lo Estimated percentage of new TB cases with rifampicin resistant TB: low bound 1.8 7 e\_mdr\_pct\_rr\_new Estimated percentage of new rifampicin resistant TB cases that have MDR-TB 56 8 source\_rr\_ret Method used to estimate proportion of previously treated TB patients with rifampicin-resistant TB Survey 9 source\_drs\_coverage\_ret Indicates whether national or subnational data from drug resistance surveys or surveillance was used to estimate the proportion of previously treated TB cases with MDR-TB National 10 source\_drs\_year\_ret Year of drug resistance surveillance, survey or model used to estimate proportion of previously treated TB cases with MDR-TB 2011 11 e\_rr\_pct\_ret Estimated percentage of previously treated TB cases with rifampicin resistant TB 6.4 12 e\_rr\_pct\_ret\_hi Estimated percentage of previously treated TB cases with rifampicin resistant TB: high bound 4 13 e\_rr\_pct\_ret\_lo Estimated percentage of previously treated TB cases with rifampicin resistant TB: low bound 9.2 14 e\_mdr\_pct\_rr\_ret Estimated percentage of previously treated rifampicin resistant TB cases that have MDR-TB 76 15 e\_inc\_rr\_num Estimated incidence of rifampicin resistant TB (absolute number) 330 16 e\_inc\_rr\_num\_hi Estimated incidence of rifampicin resistant TB (absolute number): high bound 90 17 e\_inc\_rr\_num\_lo Estimated incidence of rifampicin resistant TB (absolute number): low bound 710 18 e\_mdr\_pct\_rr Estimated percentage of rifampicin resistant TB cases that have MDR-TB 63 19 e\_rr\_in\_notified\_pulm Estimated number of RR-TB cases among notified pulmonary TB cases 180 20 e\_rr\_in\_notified\_pulm\_hi Estimated number of RR-TB cases among notified pulmonary TB cases: high bound 83 21 e\_rr\_in\_notified\_pulm\_lo Estimated number of RR-TB cases among notified pulmonary TB cases: low bound 270 ==== ============================= ========================================================================================================================================================================== ======== WHO_tx_success_rates2021 ------------------------ ==== ====== ========================================================================= ===================================================================================================== ========================================================================================================================================== ========================================================================================================== 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======================================================================================= ======================================== ============================================================================= ============================================= ================================= ============================================== .. year Are outcomes of relapse cases included in the newrel outcome variables? Outcomes for all new and relapse cases (but only new cases if rel\_with\_new\_flg = 0): cohort size Outcomes for all new and relapse cases (but only new cases if rel\_with\_new\_flg = 0): treatment success (cured or treatment completed) Outcomes for all new and relapse cases (but only new cases if rel\_with\_new\_flg = 0): treatment failed Outcomes for all new and relapse cases (but only new cases if rel\_with\_new\_flg = 0): died Outcomes for all new and relapse cases (but only new cases if rel\_with\_new\_flg = 0): lost to follow-up Treatment success rate for all new cases (including relapse cases if rel\_with\_new\_flg = 1), percent Outcomes for previously treated patients (excluding relapse cases if rel\_with\_new\_flg = 1): cohort size Outcomes for previously treated patients (excluding relapse cases if rel\_with\_new\_flg = 1): treatment success (cured or treatment completed) Outcomes for previously treated patients (excluding relapse cases if rel\_with\_new\_flg = 1): treatment failed Outcomes for previously treated patients (excluding relapse cases if rel\_with\_new\_flg = 1): died Outcomes for previously treated patients (excluding relapse cases if rel\_with\_new\_flg = 1): lost to follow-up Treatment success rate for re-treatment cases (excluding relapse cases if rel\_with\_new\_flg = 1), percent Outcomes for HIV-positive TB cases, all types: cohort size Outcomes for HIV-positive TB cases, all types: treatment success (cured or treatment completed) Outcomes for HIV-positive TB cases, all types: treatment failed Outcomes for HIV-positive TB cases, all types: died Outcomes for HIV-positive TB cases, all types: lost to follow-up Treatment success rate for HIV-positive TB cases, percent Outcomes for new and relapse cases in children aged 0-14 years: cohort size Outcomes for new and relapse cases in children aged 0-14 years: treatment success Outcomes for new and relapse cases in children aged 0-14 years: treatment failed Outcomes for new and relapse cases in children aged 0-14 years: died Outcomes for new and relapse cases in children aged 0-14 years: lost to follow-up Treatment success rate for new and relapse cases in children aged 0-14 years, percent Outcomes for MDR-TB cases: cohort size Outcomes for MDR-TB cases: treatment success (Cured or treatment completed) Outcomes for MDR-TB cases: treatment failed Outcomes for MDR-TB cases: died Outcomes for MDR-TB cases: lost to follow-up ==== ====== ========================================================================= ===================================================================================================== ========================================================================================================================================== ========================================================================================================== ============================================================================================== 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================================= ============================================== 0 2010 83 77 26 18 2 5 1 1 2011 83 82 16 11 4 1 2 2012 1 19361 15849 159 2015 292 82 1493 847 8 136 8 57 19 12 0 6 1 3 2013 1 17779 14506 139 1710 312 82 19 10 0 7 1 4 2014 1 16267 13867 148 1414 332 85 1456 1086 8 152 30 75 53 31 0 18 2 5 2015 1 15597 12585 164 1576 358 81 1284 977 9 218 32 76 7799 6320 92 959 108 81 64 39 0 21 3 6 2016 1 15683 12877 153 1590 311 82 1023 828 11 130 14 81 7804 6244 101 938 121 80 58 34 1 17 5 7 2017 1 16321 14003 104 1586 266 86 352 281 9 37 11 80 7763 6498 67 938 117 84 58 32 1 20 4 8 2018 1 15435 13522 140 1286 246 88 321 259 13 21 19 81 7268 6222 81 790 73 86 1183 1096 93 ==== ====== ========================================================================= ===================================================================================================== 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====================================================================== =================================================================================== ======================================================================================= ======================================== ============================================================================= ============================================= ================================= ============================================== NTP2019 ------- ==== ====== ===================================== ===================== =========================== ============= ======================== ============================== ================================== ============================ ===================================== .. year case\_notification\_rate\_per\_100k treatment\_coverage treatment\_success\_rates death\_rate percent\_hiv\_positive number\_notified\_mdr\_cases percent\_mdr\_treatment\_success percent\_death\_mdr\_cases coverage\_ipt\_paediatric\_contacts ==== ====== ===================================== ===================== =========================== ============= ======================== ============================== ================================== ============================ ===================================== 0 2010 1 2011 46 82.7 10.7 2 2012 138 51 81.8 10.7 27 63.2 31.6 3 2013 126 48 83.3 9.8 91 52.6 36.8 4 2014 112 46 85 8.9 106 58.6 34 35 5 2015 105 46 81.6 10.6 42.6 107 60.9 32.8 42 6 2016 101 47 82.1 10.3 38.8 66 58.6 29.3 51 7 2017 95 50 86 9.7 39.1 85 55 35 61 8 2018 88 48 87.2 8.6 38.5 126 68.8 57 9 2019 92 51 35.5 104 57 ==== ====== ===================================== ===================== =========================== ============= ======================== ============================== ================================== ============================ =====================================