tlo.methods package

Submodules

• tlo.methods.alri module
  • Overview
  • Alri
    • Alri.__init__()
    • Alri.read_parameters()
    • Alri.check_params_read_in_ok()
    • Alri.define_symptoms()
    • Alri.pre_initialise_population()
    • Alri.initialise_population()
    • Alri.initialise_simulation()
    • Alri.on_birth()
    • Alri.report_daly_values()
    • Alri.over_ride_availability_of_certain_consumables()
    • Alri.look_up_consumables()
    • Alri.end_episode()
    • Alri.cancel_death_and_schedule_cure()
    • Alri.check_properties()
    • Alri.do_effects_of_treatment_and_return_outcome()
    • Alri.record_sought_care_for_alri()
    • Alri.get_imci_classification_based_on_symptoms()
    • Alri._ultimate_treatment_indicated_for_patient()
    • Alri.do_at_generic_first_appt()
    • Alri.do_at_generic_first_appt_emergency()
  • AlriPollingEvent
    • AlriPollingEvent.__init__()
    • AlriPollingEvent.get_probs_of_acquiring_pathogen()
    • AlriPollingEvent.get_persons_for_new_alri()
    • AlriPollingEvent.apply()
  • AlriIncidentCase
    • AlriIncidentCase.__init__()
    • AlriIncidentCase.determine_nature_of_the_case()
    • AlriIncidentCase.apply_characteristics_of_the_case()
    • AlriIncidentCase.apply()
  • AlriNaturalRecoveryEvent
    • AlriNaturalRecoveryEvent.__init__()
    • AlriNaturalRecoveryEvent.apply()
  • AlriCureEvent
    • AlriCureEvent.__init__()
    • AlriCureEvent.apply()
  • AlriDeathEvent
    • AlriDeathEvent.__init__()
    • AlriDeathEvent.apply()
  • HSI_Alri_Treatment
    • HSI_Alri_Treatment.__init__()
    • HSI_Alri_Treatment._as_out_patient()
    • HSI_Alri_Treatment._as_in_patient()
    • HSI_Alri_Treatment._refer_to_next_level_up()
    • HSI_Alri_Treatment._refer_to_become_inpatient()
    • HSI_Alri_Treatment._schedule_follow_up_following_treatment_failure()
    • HSI_Alri_Treatment._get_cons()
    • HSI_Alri_Treatment._get_cons_group()
    • HSI_Alri_Treatment._get_cons_with_backups()
    • HSI_Alri_Treatment._assess_and_treat()
    • HSI_Alri_Treatment._has_staph_aureus()
    • HSI_Alri_Treatment._get_imci_classification_based_on_symptoms()
    • HSI_Alri_Treatment._get_imci_classification_by_SpO2_measure()
    • HSI_Alri_Treatment._get_classification_given_by_health_worker()
    • HSI_Alri_Treatment._get_disease_classification_for_treatment_decision()
    • HSI_Alri_Treatment._do_action_given_classification()
    • HSI_Alri_Treatment._provide_bronchodilator_if_wheeze()
    • HSI_Alri_Treatment.do_on_follow_up_following_treatment_failure()
    • HSI_Alri_Treatment.apply()
    • HSI_Alri_Treatment.never_ran()
  • AlriLoggingEvent
    • AlriLoggingEvent.__init__()
    • AlriLoggingEvent.new_case()
    • AlriLoggingEvent.new_recovered_case()
    • AlriLoggingEvent.new_cured_case()
    • AlriLoggingEvent.new_death()
    • AlriLoggingEvent.new_seeking_care()
    • AlriLoggingEvent.new_treated()
    • AlriLoggingEvent.new_pulmonary_complication_case()
    • AlriLoggingEvent.new_systemic_complication_case()
    • AlriLoggingEvent.new_hypoxaemic_case()
    • AlriLoggingEvent.apply()
  • AlriCheckPropertiesEvent
    • AlriCheckPropertiesEvent.__init__()
    • AlriCheckPropertiesEvent.apply()
  • AlriIndividualLoggingEvent
    • AlriIndividualLoggingEvent.__init__()
    • AlriIndividualLoggingEvent.apply()
  • AlriPropertiesOfOtherModules
    • AlriPropertiesOfOtherModules.read_parameters()
    • AlriPropertiesOfOtherModules.initialise_population()
    • AlriPropertiesOfOtherModules.initialise_simulation()
    • AlriPropertiesOfOtherModules.on_birth()
  • AlriIncidentCase_Lethal_DangerSigns_Pneumonia
    • AlriIncidentCase_Lethal_DangerSigns_Pneumonia.__init__()
    • AlriIncidentCase_Lethal_DangerSigns_Pneumonia.apply()
  • AlriIncidentCase_NonLethal_Fast_Breathing_Pneumonia
    • AlriIncidentCase_NonLethal_Fast_Breathing_Pneumonia.__init__()
    • AlriIncidentCase_NonLethal_Fast_Breathing_Pneumonia.apply()
• tlo.methods.bed_days module
• tlo.methods.bladder_cancer module
  • BladderCancer
    • BladderCancer.__init__()
    • BladderCancer.read_parameters()
    • BladderCancer.initialise_population()
    • BladderCancer.initialise_simulation()
    • BladderCancer.on_birth()
    • BladderCancer.on_hsi_alert()
    • BladderCancer.report_daly_values()
    • BladderCancer.do_at_generic_first_appt()
  • BladderCancerMainPollingEvent
    • BladderCancerMainPollingEvent.__init__()
    • BladderCancerMainPollingEvent.apply()
  • HSI_BladderCancer_Investigation_Following_Blood_Urine
    • HSI_BladderCancer_Investigation_Following_Blood_Urine.__init__()
    • HSI_BladderCancer_Investigation_Following_Blood_Urine.apply()
  • HSI_BladderCancer_Investigation_Following_pelvic_pain
    • HSI_BladderCancer_Investigation_Following_pelvic_pain.__init__()
    • HSI_BladderCancer_Investigation_Following_pelvic_pain.apply()
  • HSI_BladderCancer_StartTreatment
    • HSI_BladderCancer_StartTreatment.__init__()
    • HSI_BladderCancer_StartTreatment.apply()
  • HSI_BladderCancer_PostTreatmentCheck
    • HSI_BladderCancer_PostTreatmentCheck.__init__()
    • HSI_BladderCancer_PostTreatmentCheck.apply()
  • HSI_BladderCancer_PalliativeCare
    • HSI_BladderCancer_PalliativeCare.__init__()
    • HSI_BladderCancer_PalliativeCare.apply()
  • BladderCancerLoggingEvent
    • BladderCancerLoggingEvent.__init__()
    • BladderCancerLoggingEvent.apply()
• tlo.methods.breast_cancer module
  • BreastCancer
    • BreastCancer.__init__()
    • BreastCancer.read_parameters()
    • BreastCancer.initialise_population()
    • BreastCancer.initialise_simulation()
    • BreastCancer.on_birth()
    • BreastCancer.on_hsi_alert()
    • BreastCancer.report_daly_values()
    • BreastCancer.do_at_generic_first_appt()
  • BreastCancerMainPollingEvent
    • BreastCancerMainPollingEvent.__init__()
    • BreastCancerMainPollingEvent.apply()
  • HSI_BreastCancer_Investigation_Following_breast_lump_discernible
    • HSI_BreastCancer_Investigation_Following_breast_lump_discernible.__init__()
    • HSI_BreastCancer_Investigation_Following_breast_lump_discernible.apply()
  • HSI_BreastCancer_StartTreatment
    • HSI_BreastCancer_StartTreatment.__init__()
    • HSI_BreastCancer_StartTreatment.apply()
  • HSI_BreastCancer_PostTreatmentCheck
    • HSI_BreastCancer_PostTreatmentCheck.__init__()
    • HSI_BreastCancer_PostTreatmentCheck.apply()
  • HSI_BreastCancer_PalliativeCare
    • HSI_BreastCancer_PalliativeCare.__init__()
    • HSI_BreastCancer_PalliativeCare.apply()
  • BreastCancerLoggingEvent
    • BreastCancerLoggingEvent.__init__()
    • BreastCancerLoggingEvent.apply()
• tlo.methods.cancer_consumables module
• tlo.methods.cardio_metabolic_disorders module
  • CardioMetabolicDisorders
    • CardioMetabolicDisorders.__init__()
    • CardioMetabolicDisorders.read_parameters()
    • CardioMetabolicDisorders.initialise_population()
    • CardioMetabolicDisorders.initialise_simulation()
    • CardioMetabolicDisorders.build_linear_model()
    • CardioMetabolicDisorders.build_linear_model_symptoms()
    • CardioMetabolicDisorders.on_birth()
    • CardioMetabolicDisorders.update_risk_score()
    • CardioMetabolicDisorders.report_daly_values()
    • CardioMetabolicDisorders.on_hsi_alert()
    • CardioMetabolicDisorders.do_at_generic_first_appt()
    • CardioMetabolicDisorders.do_at_generic_first_appt_emergency()
  • CardioMetabolicDisorders_MainPollingEvent
    • CardioMetabolicDisorders_MainPollingEvent.__init__()
    • CardioMetabolicDisorders_MainPollingEvent.apply()
  • CardioMetabolicDisordersEvent
    • CardioMetabolicDisordersEvent.__init__()
    • CardioMetabolicDisordersEvent.apply()
  • CardioMetabolicDisordersDeathEvent
    • CardioMetabolicDisordersDeathEvent.__init__()
    • CardioMetabolicDisordersDeathEvent.apply()
    • CardioMetabolicDisordersDeathEvent.check_if_event_and_do_death()
  • CardioMetabolicDisordersWeightLossEvent
    • CardioMetabolicDisordersWeightLossEvent.__init__()
    • CardioMetabolicDisordersWeightLossEvent.apply()
  • CardioMetabolicDisorders_LoggingEvent
    • CardioMetabolicDisorders_LoggingEvent.__init__()
    • CardioMetabolicDisorders_LoggingEvent.apply()
  • HSI_CardioMetabolicDisorders_CommunityTestingForHypertension
    • HSI_CardioMetabolicDisorders_CommunityTestingForHypertension.__init__()
    • HSI_CardioMetabolicDisorders_CommunityTestingForHypertension.apply()
  • HSI_CardioMetabolicDisorders_Investigations
    • HSI_CardioMetabolicDisorders_Investigations.__init__()
    • HSI_CardioMetabolicDisorders_Investigations.do_for_each_condition()
    • HSI_CardioMetabolicDisorders_Investigations.apply()
  • HSI_CardioMetabolicDisorders_StartWeightLossAndMedication
    • HSI_CardioMetabolicDisorders_StartWeightLossAndMedication.__init__()
    • HSI_CardioMetabolicDisorders_StartWeightLossAndMedication.apply()
  • HSI_CardioMetabolicDisorders_Refill_Medication
    • HSI_CardioMetabolicDisorders_Refill_Medication.__init__()
    • HSI_CardioMetabolicDisorders_Refill_Medication.apply()
    • HSI_CardioMetabolicDisorders_Refill_Medication.did_not_run()
  • HSI_CardioMetabolicDisorders_SeeksEmergencyCareAndGetsTreatment
    • HSI_CardioMetabolicDisorders_SeeksEmergencyCareAndGetsTreatment.__init__()
    • HSI_CardioMetabolicDisorders_SeeksEmergencyCareAndGetsTreatment.do_for_each_event_to_be_investigated()
    • HSI_CardioMetabolicDisorders_SeeksEmergencyCareAndGetsTreatment.apply()
    • HSI_CardioMetabolicDisorders_SeeksEmergencyCareAndGetsTreatment.did_not_run()
• tlo.methods.care_of_women_during_pregnancy module
  • CareOfWomenDuringPregnancy
    • CareOfWomenDuringPregnancy.__init__()
    • CareOfWomenDuringPregnancy.read_parameters()
    • CareOfWomenDuringPregnancy.initialise_population()
    • CareOfWomenDuringPregnancy.get_and_store_pregnancy_item_codes()
    • CareOfWomenDuringPregnancy.initialise_simulation()
    • CareOfWomenDuringPregnancy.care_of_women_in_pregnancy_property_reset()
    • CareOfWomenDuringPregnancy.on_birth()
    • CareOfWomenDuringPregnancy.further_on_birth_care_of_women_in_pregnancy()
    • CareOfWomenDuringPregnancy.on_hsi_alert()
    • CareOfWomenDuringPregnancy.get_approx_days_of_pregnancy()
    • CareOfWomenDuringPregnancy.determine_gestational_age_for_next_contact()
    • CareOfWomenDuringPregnancy.antenatal_care_scheduler()
    • CareOfWomenDuringPregnancy.schedule_admission()
    • CareOfWomenDuringPregnancy.call_if_maternal_emergency_assessment_cant_run()
    • CareOfWomenDuringPregnancy.check_intervention_should_run_and_update_mni()
    • CareOfWomenDuringPregnancy.screening_interventions_delivered_at_every_contact()
    • CareOfWomenDuringPregnancy.iron_and_folic_acid_supplementation()
    • CareOfWomenDuringPregnancy.balance_energy_and_protein_supplementation()
    • CareOfWomenDuringPregnancy.insecticide_treated_bed_net()
    • CareOfWomenDuringPregnancy.tb_screening()
    • CareOfWomenDuringPregnancy.tetanus_vaccination()
    • CareOfWomenDuringPregnancy.calcium_supplementation()
    • CareOfWomenDuringPregnancy.point_of_care_hb_testing()
    • CareOfWomenDuringPregnancy.albendazole_administration()
    • CareOfWomenDuringPregnancy.hep_b_testing()
    • CareOfWomenDuringPregnancy.syphilis_screening_and_treatment()
    • CareOfWomenDuringPregnancy.hiv_testing()
    • CareOfWomenDuringPregnancy.iptp_administration()
    • CareOfWomenDuringPregnancy.gdm_screening()
    • CareOfWomenDuringPregnancy.interventions_delivered_each_visit_from_anc2()
    • CareOfWomenDuringPregnancy.check_anc1_can_run()
    • CareOfWomenDuringPregnancy.check_subsequent_anc_can_run()
    • CareOfWomenDuringPregnancy.full_blood_count_testing()
    • CareOfWomenDuringPregnancy.antenatal_blood_transfusion()
    • CareOfWomenDuringPregnancy.initiate_maintenance_anti_hypertensive_treatment()
    • CareOfWomenDuringPregnancy.initiate_treatment_for_severe_hypertension()
    • CareOfWomenDuringPregnancy.treatment_for_severe_pre_eclampsia_or_eclampsia()
    • CareOfWomenDuringPregnancy.antibiotics_for_prom()
    • CareOfWomenDuringPregnancy.ectopic_pregnancy_treatment_doesnt_run()
    • CareOfWomenDuringPregnancy.calculate_beddays()
  • HSI_CareOfWomenDuringPregnancy_FirstAntenatalCareContact
    • HSI_CareOfWomenDuringPregnancy_FirstAntenatalCareContact.__init__()
    • HSI_CareOfWomenDuringPregnancy_FirstAntenatalCareContact.apply()
    • HSI_CareOfWomenDuringPregnancy_FirstAntenatalCareContact.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_FirstAntenatalCareContact.not_available()
  • HSI_CareOfWomenDuringPregnancy_SecondAntenatalCareContact
    • HSI_CareOfWomenDuringPregnancy_SecondAntenatalCareContact.__init__()
    • HSI_CareOfWomenDuringPregnancy_SecondAntenatalCareContact.apply()
    • HSI_CareOfWomenDuringPregnancy_SecondAntenatalCareContact.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_SecondAntenatalCareContact.not_available()
  • HSI_CareOfWomenDuringPregnancy_ThirdAntenatalCareContact
    • HSI_CareOfWomenDuringPregnancy_ThirdAntenatalCareContact.__init__()
    • HSI_CareOfWomenDuringPregnancy_ThirdAntenatalCareContact.apply()
    • HSI_CareOfWomenDuringPregnancy_ThirdAntenatalCareContact.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_ThirdAntenatalCareContact.not_available()
  • HSI_CareOfWomenDuringPregnancy_FourthAntenatalCareContact
    • HSI_CareOfWomenDuringPregnancy_FourthAntenatalCareContact.__init__()
    • HSI_CareOfWomenDuringPregnancy_FourthAntenatalCareContact.apply()
    • HSI_CareOfWomenDuringPregnancy_FourthAntenatalCareContact.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_FourthAntenatalCareContact.not_available()
  • HSI_CareOfWomenDuringPregnancy_FifthAntenatalCareContact
    • HSI_CareOfWomenDuringPregnancy_FifthAntenatalCareContact.__init__()
    • HSI_CareOfWomenDuringPregnancy_FifthAntenatalCareContact.apply()
    • HSI_CareOfWomenDuringPregnancy_FifthAntenatalCareContact.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_FifthAntenatalCareContact.not_available()
  • HSI_CareOfWomenDuringPregnancy_SixthAntenatalCareContact
    • HSI_CareOfWomenDuringPregnancy_SixthAntenatalCareContact.__init__()
    • HSI_CareOfWomenDuringPregnancy_SixthAntenatalCareContact.apply()
    • HSI_CareOfWomenDuringPregnancy_SixthAntenatalCareContact.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_SixthAntenatalCareContact.not_available()
  • HSI_CareOfWomenDuringPregnancy_SeventhAntenatalCareContact
    • HSI_CareOfWomenDuringPregnancy_SeventhAntenatalCareContact.__init__()
    • HSI_CareOfWomenDuringPregnancy_SeventhAntenatalCareContact.apply()
    • HSI_CareOfWomenDuringPregnancy_SeventhAntenatalCareContact.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_SeventhAntenatalCareContact.not_available()
  • HSI_CareOfWomenDuringPregnancy_EighthAntenatalCareContact
    • HSI_CareOfWomenDuringPregnancy_EighthAntenatalCareContact.__init__()
    • HSI_CareOfWomenDuringPregnancy_EighthAntenatalCareContact.apply()
    • HSI_CareOfWomenDuringPregnancy_EighthAntenatalCareContact.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_EighthAntenatalCareContact.not_available()
  • HSI_CareOfWomenDuringPregnancy_FocusedANCVisit
    • HSI_CareOfWomenDuringPregnancy_FocusedANCVisit.__init__()
    • HSI_CareOfWomenDuringPregnancy_FocusedANCVisit.apply()
  • HSI_CareOfWomenDuringPregnancy_PresentsForInductionOfLabour
    • HSI_CareOfWomenDuringPregnancy_PresentsForInductionOfLabour.__init__()
    • HSI_CareOfWomenDuringPregnancy_PresentsForInductionOfLabour.apply()
  • HSI_CareOfWomenDuringPregnancy_AntenatalWardInpatientCare
    • HSI_CareOfWomenDuringPregnancy_AntenatalWardInpatientCare.__init__()
    • HSI_CareOfWomenDuringPregnancy_AntenatalWardInpatientCare.apply()
    • HSI_CareOfWomenDuringPregnancy_AntenatalWardInpatientCare.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_AntenatalWardInpatientCare.not_available()
  • HSI_CareOfWomenDuringPregnancy_AntenatalOutpatientManagementOfAnaemia
    • HSI_CareOfWomenDuringPregnancy_AntenatalOutpatientManagementOfAnaemia.__init__()
    • HSI_CareOfWomenDuringPregnancy_AntenatalOutpatientManagementOfAnaemia.apply()
    • HSI_CareOfWomenDuringPregnancy_AntenatalOutpatientManagementOfAnaemia.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_AntenatalOutpatientManagementOfAnaemia.not_available()
  • HSI_CareOfWomenDuringPregnancy_AntenatalOutpatientManagementOfGestationalDiabetes
    • HSI_CareOfWomenDuringPregnancy_AntenatalOutpatientManagementOfGestationalDiabetes.__init__()
    • HSI_CareOfWomenDuringPregnancy_AntenatalOutpatientManagementOfGestationalDiabetes.apply()
    • HSI_CareOfWomenDuringPregnancy_AntenatalOutpatientManagementOfGestationalDiabetes.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_AntenatalOutpatientManagementOfGestationalDiabetes.not_available()
  • HSI_CareOfWomenDuringPregnancy_PostAbortionCaseManagement
    • HSI_CareOfWomenDuringPregnancy_PostAbortionCaseManagement.__init__()
    • HSI_CareOfWomenDuringPregnancy_PostAbortionCaseManagement.apply()
    • HSI_CareOfWomenDuringPregnancy_PostAbortionCaseManagement.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_PostAbortionCaseManagement.not_available()
  • HSI_CareOfWomenDuringPregnancy_TreatmentForEctopicPregnancy
    • HSI_CareOfWomenDuringPregnancy_TreatmentForEctopicPregnancy.__init__()
    • HSI_CareOfWomenDuringPregnancy_TreatmentForEctopicPregnancy.apply()
    • HSI_CareOfWomenDuringPregnancy_TreatmentForEctopicPregnancy.never_ran()
    • HSI_CareOfWomenDuringPregnancy_TreatmentForEctopicPregnancy.did_not_run()
    • HSI_CareOfWomenDuringPregnancy_TreatmentForEctopicPregnancy.not_available()
  • CareOfWomenDuringPregnancyLoggingEvent
    • CareOfWomenDuringPregnancyLoggingEvent.__init__()
    • CareOfWomenDuringPregnancyLoggingEvent.apply()
• tlo.methods.causes module
• tlo.methods.chronicsyndrome module
  • ChronicSyndrome
    • ChronicSyndrome.__init__()
    • ChronicSyndrome.read_parameters()
    • ChronicSyndrome.initialise_population()
    • ChronicSyndrome.initialise_simulation()
    • ChronicSyndrome.on_birth()
    • ChronicSyndrome.on_hsi_alert()
    • ChronicSyndrome.report_daly_values()
    • ChronicSyndrome.do_at_generic_first_appt_emergency()
  • ChronicSyndromeEvent
    • ChronicSyndromeEvent.__init__()
    • ChronicSyndromeEvent.apply()
  • ChronicSyndromeDeathEvent
    • ChronicSyndromeDeathEvent.__init__()
    • ChronicSyndromeDeathEvent.apply()
  • ChronicSyndrome_LaunchOutreachEvent
    • ChronicSyndrome_LaunchOutreachEvent.__init__()
    • ChronicSyndrome_LaunchOutreachEvent.apply()
  • HSI_ChronicSyndrome_SeeksEmergencyCareAndGetsTreatment
    • HSI_ChronicSyndrome_SeeksEmergencyCareAndGetsTreatment.__init__()
    • HSI_ChronicSyndrome_SeeksEmergencyCareAndGetsTreatment.apply()
    • HSI_ChronicSyndrome_SeeksEmergencyCareAndGetsTreatment.did_not_run()
  • HSI_ChronicSyndrome_Outreach_Individual
    • HSI_ChronicSyndrome_Outreach_Individual.__init__()
    • HSI_ChronicSyndrome_Outreach_Individual.apply()
    • HSI_ChronicSyndrome_Outreach_Individual.did_not_run()
  • ChronicSyndrome_PopulationWideBehaviourChange
    • ChronicSyndrome_PopulationWideBehaviourChange.__init__()
    • ChronicSyndrome_PopulationWideBehaviourChange.apply()
  • ChronicSyndromeLoggingEvent
    • ChronicSyndromeLoggingEvent.__init__()
    • ChronicSyndromeLoggingEvent.apply()
• tlo.methods.consumables module
• tlo.methods.contraception module
  • Contraception
    • Contraception.__init__()
    • Contraception.read_parameters()
    • Contraception.pre_initialise_population()
    • Contraception.initialise_population()
    • Contraception.initialise_simulation()
    • Contraception.on_birth()
    • Contraception.end_pregnancy()
    • Contraception.process_params()
    • Contraception.update_params_for_interventions()
    • Contraception.select_contraceptive_following_birth()
    • Contraception.get_item_code_for_each_contraceptive()
    • Contraception.schedule_batch_of_contraceptive_changes()
    • Contraception.do_and_log_individual_contraception_change()
    • Contraception.schedule_births_for_first_9_months()
    • Contraception.on_simulation_end()
  • DirectBirth
    • DirectBirth.__init__()
    • DirectBirth.apply()
  • ContraceptionPoll
    • ContraceptionPoll.__init__()
    • ContraceptionPoll.apply()
    • ContraceptionPoll.update_contraceptive()
    • ContraceptionPoll.initiate()
    • ContraceptionPoll.discontinue_switch_or_continue()
    • ContraceptionPoll.update_pregnancy()
    • ContraceptionPoll.pregnancy_for_those_on_contraceptive()
    • ContraceptionPoll.pregnancy_for_those_not_on_contraceptive()
    • ContraceptionPoll.set_new_pregnancy()
  • ContraceptionLoggingEvent
    • ContraceptionLoggingEvent.__init__()
    • ContraceptionLoggingEvent.apply()
  • HSI_Contraception_FamilyPlanningAppt
    • HSI_Contraception_FamilyPlanningAppt.__init__()
    • HSI_Contraception_FamilyPlanningAppt._get_appt_footprint()
    • HSI_Contraception_FamilyPlanningAppt.apply()
    • HSI_Contraception_FamilyPlanningAppt.post_apply_hook()
    • HSI_Contraception_FamilyPlanningAppt.reschedule()
    • HSI_Contraception_FamilyPlanningAppt.never_ran()
  • StartInterventions
    • StartInterventions.__init__()
    • StartInterventions.apply()
  • SimplifiedPregnancyAndLabour
    • SimplifiedPregnancyAndLabour.__init__()
    • SimplifiedPregnancyAndLabour.read_parameters()
    • SimplifiedPregnancyAndLabour.initialise_population()
    • SimplifiedPregnancyAndLabour.initialise_simulation()
    • SimplifiedPregnancyAndLabour.on_birth()
    • SimplifiedPregnancyAndLabour.set_date_of_labour()
  • EndOfPregnancyEvent
    • EndOfPregnancyEvent.__init__()
    • EndOfPregnancyEvent.apply()
• tlo.methods.copd module
  • Copd
    • Copd.__init__()
    • Copd.read_parameters()
    • Copd.pre_initialise_population()
    • Copd.initialise_population()
    • Copd.initialise_simulation()
    • Copd.on_birth()
    • Copd.report_daly_values()
    • Copd.define_symptoms()
    • Copd.lookup_item_codes()
    • Copd.do_logging()
    • Copd._common_first_appt()
    • Copd.do_at_generic_first_appt()
    • Copd.do_at_generic_first_appt_emergency()
  • CopdPollEvent
    • CopdPollEvent.__init__()
    • CopdPollEvent.apply()
    • CopdPollEvent.gen_random_date_in_next_three_months()
    • CopdPollEvent.increment_category()
    • CopdPollEvent.progress_to_next_lung_function()
  • CopdExacerbationEvent
    • CopdExacerbationEvent.__init__()
    • CopdExacerbationEvent.apply()
  • CopdDeath
    • CopdDeath.__init__()
    • CopdDeath.apply()
  • HSI_Copd_TreatmentOnSevereExacerbation
    • HSI_Copd_TreatmentOnSevereExacerbation.__init__()
    • HSI_Copd_TreatmentOnSevereExacerbation.apply()
• tlo.methods.demography module
  • Demography
    • Demography.__init__()
    • Demography.read_parameters()
    • Demography.pre_initialise_population()
    • Demography.initialise_population()
    • Demography.initialise_simulation()
    • Demography.on_birth()
    • Demography._edit_init_pop_to_prevent_persons_greater_than_max_age()
    • Demography._edit_init_pop_so_that_equal_number_in_each_district()
    • Demography.process_causes_of_death()
    • Demography.do_death()
    • Demography.create_mappers_from_causes_of_death_to_label()
    • Demography.calc_py_lived_in_last_year()
    • Demography.compute_initial_model_to_data_popsize_ratio()
  • AgeUpdateEvent
    • AgeUpdateEvent.__init__()
    • AgeUpdateEvent.apply()
  • OtherDeathPoll
    • OtherDeathPoll.__init__()
    • OtherDeathPoll.get_mort_risk_per_poll()
    • OtherDeathPoll.get_all_cause_mort_risk_per_poll()
    • OtherDeathPoll.get_proportion_of_deaths_to_represent_as_other_deaths()
    • OtherDeathPoll.apply()
  • InstantaneousDeath
    • InstantaneousDeath.__init__()
    • InstantaneousDeath.apply()
  • DemographyLoggingEvent
    • DemographyLoggingEvent.__init__()
    • DemographyLoggingEvent.apply()
• tlo.methods.depression module
  • Depression
    • Depression.__init__()
    • Depression.read_parameters()
    • Depression.apply_linear_model()
    • Depression.initialise_population()
    • Depression.initialise_simulation()
    • Depression.on_birth()
    • Depression.on_hsi_alert()
    • Depression.report_daly_values()
    • Depression._check_for_suspected_depression()
    • Depression.do_on_presentation_to_care()
    • Depression.do_when_suspected_depression()
    • Depression.do_at_generic_first_appt()
    • Depression.do_at_generic_first_appt_emergency()
  • DepressionPollingEvent
    • DepressionPollingEvent.__init__()
    • DepressionPollingEvent.apply()
  • DepressionSelfHarmEvent
    • DepressionSelfHarmEvent.__init__()
    • DepressionSelfHarmEvent.apply()
  • DepressionSuicideEvent
    • DepressionSuicideEvent.__init__()
    • DepressionSuicideEvent.apply()
  • DepressionLoggingEvent
    • DepressionLoggingEvent.__init__()
    • DepressionLoggingEvent.apply()
  • HSI_Depression_TalkingTherapy
    • HSI_Depression_TalkingTherapy.__init__()
    • HSI_Depression_TalkingTherapy.apply()
  • HSI_Depression_Start_Antidepressant
    • HSI_Depression_Start_Antidepressant.__init__()
    • HSI_Depression_Start_Antidepressant.apply()
  • HSI_Depression_Refill_Antidepressant
    • HSI_Depression_Refill_Antidepressant.__init__()
    • HSI_Depression_Refill_Antidepressant.apply()
    • HSI_Depression_Refill_Antidepressant.did_not_run()
• tlo.methods.diarrhoea module
  • Overview
  • Diarrhoea
    • Diarrhoea.__init__()
    • Diarrhoea.read_parameters()
    • Diarrhoea.initialise_population()
    • Diarrhoea.initialise_simulation()
    • Diarrhoea.on_birth()
    • Diarrhoea.on_hsi_alert()
    • Diarrhoea.report_daly_values()
    • Diarrhoea.look_up_consumables()
    • Diarrhoea.do_treatment()
    • Diarrhoea.cancel_death_date()
    • Diarrhoea.end_episode()
    • Diarrhoea.check_properties()
    • Diarrhoea.do_at_generic_first_appt()
  • DiarrhoeaPollingEvent
    • DiarrhoeaPollingEvent.__init__()
    • DiarrhoeaPollingEvent.compute_fraction_of_year_between_polling_event()
    • DiarrhoeaPollingEvent.apply()
  • DiarrhoeaIncidentCase
    • DiarrhoeaIncidentCase.__init__()
    • DiarrhoeaIncidentCase.apply()
  • DiarrhoeaNaturalRecoveryEvent
    • DiarrhoeaNaturalRecoveryEvent.__init__()
    • DiarrhoeaNaturalRecoveryEvent.apply()
  • DiarrhoeaDeathEvent
    • DiarrhoeaDeathEvent.__init__()
    • DiarrhoeaDeathEvent.apply()
  • DiarrhoeaCureEvent
    • DiarrhoeaCureEvent.__init__()
    • DiarrhoeaCureEvent.apply()
  • HSI_Diarrhoea_Treatment_Outpatient
    • HSI_Diarrhoea_Treatment_Outpatient.__init__()
    • HSI_Diarrhoea_Treatment_Outpatient.apply()
  • HSI_Diarrhoea_Treatment_Inpatient
    • HSI_Diarrhoea_Treatment_Inpatient.__init__()
    • HSI_Diarrhoea_Treatment_Inpatient.apply()
  • DiarrhoeaPropertiesOfOtherModules
    • DiarrhoeaPropertiesOfOtherModules.__init__()
    • DiarrhoeaPropertiesOfOtherModules.read_parameters()
    • DiarrhoeaPropertiesOfOtherModules.initialise_population()
    • DiarrhoeaPropertiesOfOtherModules.initialise_simulation()
    • DiarrhoeaPropertiesOfOtherModules.on_birth()
  • DiarrhoeaCheckPropertiesEvent
    • DiarrhoeaCheckPropertiesEvent.__init__()
    • DiarrhoeaCheckPropertiesEvent.apply()
• tlo.methods.dxmanager module
• tlo.methods.enhanced_lifestyle module
  • Lifestyle
    • Lifestyle.__init__()
    • Lifestyle.read_parameters()
    • Lifestyle.pre_initialise_population()
    • Lifestyle.initialise_population()
    • Lifestyle.initialise_simulation()
    • Lifestyle.on_birth()
  • LifestyleEvent
    • LifestyleEvent.__init__()
    • LifestyleEvent.apply()
  • LifestylesLoggingEvent
    • LifestylesLoggingEvent.__init__()
    • LifestylesLoggingEvent.apply()
• tlo.methods.epi module
  • Epi
    • Epi.__init__()
    • Epi.read_parameters()
    • Epi.initialise_population()
    • Epi.initialise_simulation()
    • Epi.on_birth()
    • Epi.report_daly_values()
    • Epi.increment_dose()
    • Epi.get_item_codes()
  • HpvScheduleEvent
    • HpvScheduleEvent.__init__()
    • HpvScheduleEvent.apply()
  • HsiBaseVaccine
    • HsiBaseVaccine.__init__()
    • HsiBaseVaccine.treatment_id()
    • HsiBaseVaccine.apply()
  • HSI_BcgVaccine
    • HSI_BcgVaccine.treatment_id()
    • HSI_BcgVaccine.apply()
  • HSI_opv
    • HSI_opv.treatment_id()
    • HSI_opv.apply()
  • HSI_DtpHibHepVaccine
    • HSI_DtpHibHepVaccine.treatment_id()
    • HSI_DtpHibHepVaccine.apply()
  • HSI_RotaVaccine
    • HSI_RotaVaccine.treatment_id()
    • HSI_RotaVaccine.apply()
  • HSI_PneumoVaccine
    • HSI_PneumoVaccine.treatment_id()
    • HSI_PneumoVaccine.apply()
  • HSI_MeaslesRubellaVaccine
    • HSI_MeaslesRubellaVaccine.treatment_id()
    • HSI_MeaslesRubellaVaccine.apply()
  • HSI_HpvVaccine
    • HSI_HpvVaccine.treatment_id()
    • HSI_HpvVaccine.apply()
  • HSI_TdVaccine
    • HSI_TdVaccine.treatment_id()
    • HSI_TdVaccine.apply()
  • EpiLoggingEvent
    • EpiLoggingEvent.__init__()
    • EpiLoggingEvent.apply()
• tlo.methods.epilepsy module
  • Epilepsy
    • Epilepsy.__init__()
    • Epilepsy.read_parameters()
    • Epilepsy.initialise_population()
    • Epilepsy.initialise_simulation()
    • Epilepsy.on_birth()
    • Epilepsy.report_daly_values()
    • Epilepsy.transition_seizure_stat()
    • Epilepsy.stop_antiep()
    • Epilepsy.get_best_available_medicine()
    • Epilepsy.do_at_generic_first_appt_emergency()
  • EpilepsyEvent
    • EpilepsyEvent.__init__()
    • EpilepsyEvent.apply()
  • EpilepsyLoggingEvent
    • EpilepsyLoggingEvent.__init__()
    • EpilepsyLoggingEvent.apply()
  • HSI_Epilepsy_Start_Anti_Epileptic
    • HSI_Epilepsy_Start_Anti_Epileptic.__init__()
    • HSI_Epilepsy_Start_Anti_Epileptic.apply()
  • HSI_Epilepsy_Follow_Up
    • HSI_Epilepsy_Follow_Up.__init__()
    • HSI_Epilepsy_Follow_Up.apply()
• tlo.methods.equipment module
• tlo.methods.fullmodel module
• tlo.methods.healthburden module
  • HealthBurden
    • HealthBurden.__init__()
    • HealthBurden.read_parameters()
    • HealthBurden.initialise_population()
    • HealthBurden.initialise_simulation()
    • HealthBurden.process_causes_of_disability()
    • HealthBurden.process_causes_of_dalys()
    • HealthBurden.on_birth()
    • HealthBurden.on_simulation_end()
    • HealthBurden.get_dalys()
    • HealthBurden.get_daly_weight()
    • HealthBurden.report_live_years_lost()
    • HealthBurden.decompose_yll_by_age_and_time()
    • HealthBurden.write_to_log()
    • HealthBurden.check_multi_index()
  • Get_Current_DALYS
    • Get_Current_DALYS.__init__()
    • Get_Current_DALYS.apply()
  • Healthburden_WriteToLog
    • Healthburden_WriteToLog.__init__()
    • Healthburden_WriteToLog.apply()
• tlo.methods.healthseekingbehaviour module
  • HealthSeekingBehaviour
    • HealthSeekingBehaviour.__init__()
    • HealthSeekingBehaviour.read_parameters()
    • HealthSeekingBehaviour.initialise_population()
    • HealthSeekingBehaviour.initialise_simulation()
    • HealthSeekingBehaviour.on_birth()
    • HealthSeekingBehaviour.define_linear_models()
    • HealthSeekingBehaviour.do_at_generic_first_appt_emergency()
  • HealthSeekingBehaviourPoll
    • HealthSeekingBehaviourPoll.__init__()
    • HealthSeekingBehaviourPoll._has_any_symptoms()
    • HealthSeekingBehaviourPoll.apply()
• tlo.methods.healthsystem module
  • HealthSystem
    • HealthSystem.__init__()
    • HealthSystem.read_parameters()
    • HealthSystem.pre_initialise_population()
    • HealthSystem.initialise_population()
    • HealthSystem.initialise_simulation()
    • HealthSystem.on_birth()
    • HealthSystem.on_simulation_end()
    • HealthSystem.setup_priority_policy()
    • HealthSystem.process_healthsystem_organisation_files()
    • HealthSystem.setup_daily_capabilities()
    • HealthSystem.format_daily_capabilities()
    • HealthSystem._rescale_capabilities_to_capture_effective_capability()
    • HealthSystem.update_consumables_availability_to_represent_merging_of_levels_1b_and_2()
    • HealthSystem.get_service_availability()
    • HealthSystem.get_cons_availability()
    • HealthSystem.get_beds_availability()
    • HealthSystem.get_equip_availability()
    • HealthSystem.schedule_to_call_never_ran_on_date()
    • HealthSystem.get_mode_appt_constraints()
    • HealthSystem.get_priority_policy_initial()
    • HealthSystem.load_priority_policy()
    • HealthSystem.schedule_hsi_event()
    • HealthSystem._add_hsi_event_queue_item_to_hsi_event_queue()
    • HealthSystem.enforce_priority_policy()
    • HealthSystem.check_hsi_event_is_valid()
    • HealthSystem.is_treatment_id_allowed()
    • HealthSystem.schedule_batch_of_individual_hsi_events()
    • HealthSystem.appt_footprint_is_valid()
    • HealthSystem.get_blank_appt_footprint()
    • HealthSystem.get_facility_info()
    • HealthSystem.get_appt_footprint_as_time_request()
    • HealthSystem.get_squeeze_factors()
    • HealthSystem.record_hsi_event()
    • HealthSystem.write_to_hsi_log()
    • HealthSystem.call_and_record_never_ran_hsi_event()
    • HealthSystem.write_to_never_ran_hsi_log()
    • HealthSystem.log_current_capabilities_and_usage()
    • HealthSystem.remove_beddays_footprint()
    • HealthSystem.find_events_for_person()
    • HealthSystem.reset_queue()
    • HealthSystem.get_item_codes_from_package_name()
    • HealthSystem.get_item_code_from_item_name()
    • HealthSystem.override_availability_of_consumables()
    • HealthSystem._write_hsi_event_counts_to_log_and_reset()
    • HealthSystem._write_never_ran_hsi_event_counts_to_log_and_reset()
    • HealthSystem.on_end_of_day()
    • HealthSystem.on_end_of_month()
    • HealthSystem.on_end_of_year()
    • HealthSystem.run_individual_level_events_in_mode_0_or_1()
  • HealthSystemScheduler
    • HealthSystemScheduler.__init__()
    • HealthSystemScheduler._is_last_day_of_the_year()
    • HealthSystemScheduler._is_last_day_of_the_month()
    • HealthSystemScheduler._get_events_due_today()
    • HealthSystemScheduler.process_events_mode_0_and_1()
    • HealthSystemScheduler.process_events_mode_2()
    • HealthSystemScheduler.apply()
  • HealthSystemChangeParameters
    • HealthSystemChangeParameters.__init__()
    • HealthSystemChangeParameters.apply()
  • DynamicRescalingHRCapabilities
    • DynamicRescalingHRCapabilities.__init__()
    • DynamicRescalingHRCapabilities._get_most_recent_year_specified_for_a_change_in_configuration()
    • DynamicRescalingHRCapabilities.apply()
  • ConstantRescalingHRCapabilities
    • ConstantRescalingHRCapabilities.__init__()
    • ConstantRescalingHRCapabilities.apply()
  • RescaleHRCapabilities_ByDistrict
    • RescaleHRCapabilities_ByDistrict.__init__()
    • RescaleHRCapabilities_ByDistrict.apply()
  • HealthSystemChangeMode
    • HealthSystemChangeMode.__init__()
    • HealthSystemChangeMode.apply()
  • HealthSystemLogger
    • HealthSystemLogger.__init__()
    • HealthSystemLogger.apply()
    • HealthSystemLogger.log_number_of_staff()
• tlo.methods.hiv module
  • Hiv
    • Hiv.__init__()
    • Hiv.read_parameters()
    • Hiv.pre_initialise_population()
    • Hiv._build_linear_models()
    • Hiv.initialise_population()
    • Hiv.initialise_baseline_prevalence()
    • Hiv.initialise_baseline_art()
    • Hiv.initialise_baseline_tested()
    • Hiv.initialise_simulation()
    • Hiv.update_parameters_for_program_scaleup()
    • Hiv.on_birth()
    • Hiv.report_daly_values()
    • Hiv.mtct_during_breastfeeding()
    • Hiv.do_new_infection()
    • Hiv.sample_time_from_infection_to_aids_given_parameters()
    • Hiv.get_time_from_infection_to_aids_distribution_parameters()
    • Hiv.get_time_from_aids_to_death()
    • Hiv.do_when_hiv_diagnosed()
    • Hiv.prob_art_start_after_test()
    • Hiv.prob_viral_suppression()
    • Hiv.stops_treatment()
    • Hiv.per_capita_testing_rate()
    • Hiv.decide_whether_hiv_test_for_mother()
    • Hiv.decide_whether_hiv_test_for_infant()
    • Hiv.check_config_of_properties()
    • Hiv.do_at_generic_first_appt()
  • HivRegularPollingEvent
    • HivRegularPollingEvent.__init__()
    • HivRegularPollingEvent.apply()
  • HivInfectionEvent
    • HivInfectionEvent.__init__()
    • HivInfectionEvent.apply()
  • HivInfectionDuringBreastFeedingEvent
    • HivInfectionDuringBreastFeedingEvent.__init__()
    • HivInfectionDuringBreastFeedingEvent.apply()
  • HivAidsOnsetEvent
    • HivAidsOnsetEvent.__init__()
    • HivAidsOnsetEvent.apply()
  • HivAidsDeathEvent
    • HivAidsDeathEvent.__init__()
    • HivAidsDeathEvent.apply()
  • HivAidsTbDeathEvent
    • HivAidsTbDeathEvent.__init__()
    • HivAidsTbDeathEvent.apply()
  • Hiv_DecisionToContinueOnPrEP
    • Hiv_DecisionToContinueOnPrEP.__init__()
    • Hiv_DecisionToContinueOnPrEP.apply()
  • Hiv_DecisionToContinueTreatment
    • Hiv_DecisionToContinueTreatment.__init__()
    • Hiv_DecisionToContinueTreatment.apply()
  • HivScaleUpEvent
    • HivScaleUpEvent.__init__()
    • HivScaleUpEvent.apply()
  • HSI_Hiv_TestAndRefer
    • HSI_Hiv_TestAndRefer.__init__()
    • HSI_Hiv_TestAndRefer.apply()
  • HSI_Hiv_Circ
    • HSI_Hiv_Circ.__init__()
    • HSI_Hiv_Circ.apply()
  • HSI_Hiv_StartInfantProphylaxis
    • HSI_Hiv_StartInfantProphylaxis.__init__()
    • HSI_Hiv_StartInfantProphylaxis.apply()
    • HSI_Hiv_StartInfantProphylaxis.never_ran()
  • HSI_Hiv_StartOrContinueOnPrep
    • HSI_Hiv_StartOrContinueOnPrep.__init__()
    • HSI_Hiv_StartOrContinueOnPrep.apply()
    • HSI_Hiv_StartOrContinueOnPrep.never_ran()
  • HSI_Hiv_StartOrContinueTreatment
    • HSI_Hiv_StartOrContinueTreatment.__init__()
    • HSI_Hiv_StartOrContinueTreatment.apply()
    • HSI_Hiv_StartOrContinueTreatment.do_at_initiation()
    • HSI_Hiv_StartOrContinueTreatment.do_at_continuation()
    • HSI_Hiv_StartOrContinueTreatment.determine_vl_status()
    • HSI_Hiv_StartOrContinueTreatment.get_drugs()
    • HSI_Hiv_StartOrContinueTreatment.consider_tb()
    • HSI_Hiv_StartOrContinueTreatment.never_ran()
  • HSI_Hiv_EndOfLifeCare
    • HSI_Hiv_EndOfLifeCare.__init__()
    • HSI_Hiv_EndOfLifeCare.apply()
  • HivLoggingEvent
    • HivLoggingEvent.__init__()
    • HivLoggingEvent.apply()
  • HivCheckPropertiesEvent
    • HivCheckPropertiesEvent.__init__()
    • HivCheckPropertiesEvent.apply()
  • DummyHivModule
    • DummyHivModule.__init__()
    • DummyHivModule.read_parameters()
    • DummyHivModule.initialise_population()
    • DummyHivModule.initialise_simulation()
    • DummyHivModule.on_birth()
• tlo.methods.hiv_tb_calibration module
  • Deviance
    • Deviance.__init__()
    • Deviance.read_parameters()
    • Deviance.initialise_population()
    • Deviance.initialise_simulation()
    • Deviance.on_birth()
    • Deviance.read_data_files()
    • Deviance.read_model_outputs()
    • Deviance.weighted_mean()
    • Deviance.record_death()
    • Deviance.on_simulation_end()
• tlo.methods.hsi_event module
  • HSI_Event
    • HSI_Event.__init__()
    • HSI_Event._adjust_facility_level_to_merge_1b_and_2()
    • HSI_Event.apply()
    • HSI_Event.did_not_run()
    • HSI_Event.never_ran()
    • HSI_Event.post_apply_hook()
    • HSI_Event._run_after_hsi_event()
    • HSI_Event.run()
    • HSI_Event.get_consumables()
    • HSI_Event.make_beddays_footprint()
    • HSI_Event.is_all_beddays_allocated()
    • HSI_Event.make_appt_footprint()
    • HSI_Event.add_equipment()
    • HSI_Event.probability_all_equipment_available()
    • HSI_Event.initialise()
    • HSI_Event._check_if_appt_footprint_can_run()
    • HSI_Event._return_item_codes_in_dict()
    • HSI_Event.as_namedtuple()
  • HSIEventWrapper
    • HSIEventWrapper.__init__()
    • HSIEventWrapper.run()
• tlo.methods.hsi_generic_first_appts module
  • _BaseHSIGenericFirstAppt
    • _BaseHSIGenericFirstAppt.__init__()
    • _BaseHSIGenericFirstAppt._diagnosis_function()
    • _BaseHSIGenericFirstAppt._do_at_generic_first_appt_for_module()
    • _BaseHSIGenericFirstAppt.apply()
  • HSI_GenericNonEmergencyFirstAppt
    • HSI_GenericNonEmergencyFirstAppt.__init__()
    • HSI_GenericNonEmergencyFirstAppt._do_at_generic_first_appt_for_module()
  • HSI_GenericEmergencyFirstAppt
    • HSI_GenericEmergencyFirstAppt.__init__()
    • HSI_GenericEmergencyFirstAppt._do_at_generic_first_appt_for_module()
  • HSI_EmergencyCare_SpuriousSymptom
    • HSI_EmergencyCare_SpuriousSymptom.__init__()
    • HSI_EmergencyCare_SpuriousSymptom.apply()
• tlo.methods.labour module
  • Labour
    • Labour.__init__()
    • Labour.read_parameters()
    • Labour.initialise_population()
    • Labour.get_and_store_labour_item_codes()
    • Labour.initialise_simulation()
    • Labour.on_birth()
    • Labour.further_on_birth_labour()
    • Labour.on_hsi_alert()
    • Labour.report_daly_values()
    • Labour.set_date_of_labour()
    • Labour.predict()
    • Labour.reset_due_date()
    • Labour.check_labour_can_proceed()
    • Labour.set_intrapartum_complications()
    • Labour.set_postpartum_complications()
    • Labour.progression_of_hypertensive_disorders()
    • Labour.apply_risk_of_early_postpartum_death()
    • Labour.labour_characteristics_checker()
    • Labour.postpartum_characteristics_checker()
    • Labour.prophylactic_labour_interventions()
    • Labour.determine_delivery_mode_in_spe_or_ec()
    • Labour.assessment_and_treatment_of_severe_pre_eclampsia_mgso4()
    • Labour.assessment_and_treatment_of_hypertension()
    • Labour.assessment_and_treatment_of_eclampsia()
    • Labour.assessment_for_assisted_vaginal_delivery()
    • Labour.assessment_and_treatment_of_maternal_sepsis()
    • Labour.assessment_and_plan_for_antepartum_haemorrhage()
    • Labour.assessment_for_referral_uterine_rupture()
    • Labour.active_management_of_the_third_stage_of_labour()
    • Labour.assessment_and_treatment_of_pph_uterine_atony()
    • Labour.assessment_and_treatment_of_pph_retained_placenta()
    • Labour.surgical_management_of_pph()
    • Labour.blood_transfusion()
    • Labour.assessment_and_treatment_of_anaemia()
    • Labour.assessment_for_depression()
    • Labour.interventions_delivered_pre_discharge()
    • Labour.run_if_receives_skilled_birth_attendance_cant_run()
    • Labour.run_if_receives_postnatal_check_cant_run()
    • Labour.run_if_receives_comprehensive_emergency_obstetric_care_cant_run()
    • Labour.do_at_generic_first_appt_emergency()
  • LabourOnsetEvent
    • LabourOnsetEvent.__init__()
    • LabourOnsetEvent.apply()
  • LabourAtHomeEvent
    • LabourAtHomeEvent.__init__()
    • LabourAtHomeEvent.apply()
  • LabourDeathAndStillBirthEvent
    • LabourDeathAndStillBirthEvent.__init__()
    • LabourDeathAndStillBirthEvent.apply()
  • BirthAndPostnatalOutcomesEvent
    • BirthAndPostnatalOutcomesEvent.__init__()
    • BirthAndPostnatalOutcomesEvent.apply()
  • HSI_Labour_ReceivesSkilledBirthAttendanceDuringLabour
    • HSI_Labour_ReceivesSkilledBirthAttendanceDuringLabour.__init__()
    • HSI_Labour_ReceivesSkilledBirthAttendanceDuringLabour.apply()
    • HSI_Labour_ReceivesSkilledBirthAttendanceDuringLabour.never_ran()
    • HSI_Labour_ReceivesSkilledBirthAttendanceDuringLabour.did_not_run()
    • HSI_Labour_ReceivesSkilledBirthAttendanceDuringLabour.not_available()
  • HSI_Labour_ReceivesPostnatalCheck
    • HSI_Labour_ReceivesPostnatalCheck.__init__()
    • HSI_Labour_ReceivesPostnatalCheck.apply()
    • HSI_Labour_ReceivesPostnatalCheck.never_ran()
    • HSI_Labour_ReceivesPostnatalCheck.did_not_run()
    • HSI_Labour_ReceivesPostnatalCheck.not_available()
    • HSI_Labour_ReceivesPostnatalCheck._get_facility_level_for_pnc()
  • HSI_Labour_ReceivesComprehensiveEmergencyObstetricCare
    • HSI_Labour_ReceivesComprehensiveEmergencyObstetricCare.__init__()
    • HSI_Labour_ReceivesComprehensiveEmergencyObstetricCare.apply()
    • HSI_Labour_ReceivesComprehensiveEmergencyObstetricCare.never_ran()
    • HSI_Labour_ReceivesComprehensiveEmergencyObstetricCare.did_not_run()
    • HSI_Labour_ReceivesComprehensiveEmergencyObstetricCare.not_available()
  • HSI_Labour_PostnatalWardInpatientCare
    • HSI_Labour_PostnatalWardInpatientCare.__init__()
    • HSI_Labour_PostnatalWardInpatientCare.apply()
    • HSI_Labour_PostnatalWardInpatientCare.did_not_run()
    • HSI_Labour_PostnatalWardInpatientCare.not_available()
  • LabourAndPostnatalCareAnalysisEvent
    • LabourAndPostnatalCareAnalysisEvent.__init__()
    • LabourAndPostnatalCareAnalysisEvent.apply()
  • LabourLoggingEvent
    • LabourLoggingEvent.__init__()
    • LabourLoggingEvent.apply()
• tlo.methods.labour_lm module
• tlo.methods.malaria module
  • Malaria
    • Malaria.__init__()
    • Malaria.read_parameters()
    • Malaria.pre_initialise_population()
    • Malaria._build_linear_models()
    • Malaria.initialise_population()
    • Malaria.malaria_poll2()
    • Malaria.general_population_rdt_scheduler()
    • Malaria.initialise_simulation()
    • Malaria.update_parameters_for_program_scaleup()
    • Malaria.on_birth()
    • Malaria.report_daly_values()
    • Malaria.check_if_fever_is_caused_by_malaria()
    • Malaria.do_at_generic_first_appt()
    • Malaria.do_at_generic_first_appt_emergency()
  • MalariaPollingEventDistrict
    • MalariaPollingEventDistrict.__init__()
    • MalariaPollingEventDistrict.apply()
  • MalariaScaleUpEvent
    • MalariaScaleUpEvent.__init__()
    • MalariaScaleUpEvent.apply()
  • MalariaIPTp
    • MalariaIPTp.__init__()
    • MalariaIPTp.apply()
  • MalariaEndIPTpProtection
    • MalariaEndIPTpProtection.__init__()
    • MalariaEndIPTpProtection.apply()
  • MalariaDeathEvent
    • MalariaDeathEvent.__init__()
    • MalariaDeathEvent.apply()
  • HSI_Malaria_rdt
    • HSI_Malaria_rdt.__init__()
    • HSI_Malaria_rdt.apply()
  • HSI_Malaria_rdt_community
    • HSI_Malaria_rdt_community.__init__()
    • HSI_Malaria_rdt_community.apply()
  • HSI_Malaria_Treatment
    • HSI_Malaria_Treatment.__init__()
    • HSI_Malaria_Treatment.apply()
    • HSI_Malaria_Treatment.get_drugs()
    • HSI_Malaria_Treatment.did_not_run()
  • HSI_Malaria_Treatment_Complicated
    • HSI_Malaria_Treatment_Complicated.__init__()
    • HSI_Malaria_Treatment_Complicated.apply()
    • HSI_Malaria_Treatment_Complicated.did_not_run()
  • HSI_MalariaIPTp
    • HSI_MalariaIPTp.__init__()
    • HSI_MalariaIPTp.apply()
    • HSI_MalariaIPTp.did_not_run()
  • MalariaUpdateEvent
    • MalariaUpdateEvent.__init__()
    • MalariaUpdateEvent.apply()
  • MalariaParasiteClearanceEvent
    • MalariaParasiteClearanceEvent.__init__()
    • MalariaParasiteClearanceEvent.apply()
  • MalariaLoggingEvent
    • MalariaLoggingEvent.__init__()
    • MalariaLoggingEvent.apply()
  • MalariaTxLoggingEvent
    • MalariaTxLoggingEvent.__init__()
    • MalariaTxLoggingEvent.apply()
  • MalariaPrevDistrictLoggingEvent
    • MalariaPrevDistrictLoggingEvent.__init__()
    • MalariaPrevDistrictLoggingEvent.apply()
• tlo.methods.measles module
  • Measles
    • Measles.__init__()
    • Measles.read_parameters()
    • Measles.pre_initialise_population()
    • Measles.initialise_population()
    • Measles.initialise_simulation()
    • Measles.on_birth()
    • Measles.report_daly_values()
    • Measles.process_parameters()
    • Measles.do_at_generic_first_appt()
  • MeaslesEvent
    • MeaslesEvent.__init__()
    • MeaslesEvent.apply()
  • MeaslesOnsetEvent
    • MeaslesOnsetEvent.__init__()
    • MeaslesOnsetEvent.apply()
    • MeaslesOnsetEvent.assign_symptoms()
    • MeaslesOnsetEvent.get_prob_death()
  • MeaslesSymptomResolveEvent
    • MeaslesSymptomResolveEvent.__init__()
    • MeaslesSymptomResolveEvent.apply()
  • MeaslesDeathEvent
    • MeaslesDeathEvent.__init__()
    • MeaslesDeathEvent.apply()
  • HSI_Measles_Treatment
    • HSI_Measles_Treatment.__init__()
    • HSI_Measles_Treatment.apply()
    • HSI_Measles_Treatment.did_not_run()
  • MeaslesLoggingEvent
    • MeaslesLoggingEvent.__init__()
    • MeaslesLoggingEvent.apply()
  • MeaslesLoggingFortnightEvent
    • MeaslesLoggingFortnightEvent.__init__()
    • MeaslesLoggingFortnightEvent.apply()
  • MeaslesLoggingAnnualEvent
    • MeaslesLoggingAnnualEvent.__init__()
    • MeaslesLoggingAnnualEvent.apply()
• tlo.methods.mockitis module
  • Mockitis
    • Mockitis.__init__()
    • Mockitis.read_parameters()
    • Mockitis.initialise_population()
    • Mockitis.initialise_simulation()
    • Mockitis.on_birth()
    • Mockitis.on_hsi_alert()
    • Mockitis.report_daly_values()
    • Mockitis.do_at_generic_first_appt_emergency()
  • MockitisEvent
    • MockitisEvent.__init__()
    • MockitisEvent.apply()
  • MockitisDeathEvent
    • MockitisDeathEvent.__init__()
    • MockitisDeathEvent.apply()
  • HSI_Mockitis_PresentsForCareWithSevereSymptoms
    • HSI_Mockitis_PresentsForCareWithSevereSymptoms.__init__()
    • HSI_Mockitis_PresentsForCareWithSevereSymptoms.apply()
    • HSI_Mockitis_PresentsForCareWithSevereSymptoms.did_not_run()
  • HSI_Mockitis_StartTreatment
    • HSI_Mockitis_StartTreatment.__init__()
    • HSI_Mockitis_StartTreatment.apply()
    • HSI_Mockitis_StartTreatment.did_not_run()
  • HSI_Mockitis_TreatmentMonitoring
    • HSI_Mockitis_TreatmentMonitoring.__init__()
    • HSI_Mockitis_TreatmentMonitoring.apply()
    • HSI_Mockitis_TreatmentMonitoring.did_not_run()
  • MockitisLoggingEvent
    • MockitisLoggingEvent.__init__()
    • MockitisLoggingEvent.apply()
• tlo.methods.newborn_outcomes module
  • NewbornOutcomes
    • NewbornOutcomes.__init__()
    • NewbornOutcomes.read_parameters()
    • NewbornOutcomes.initialise_population()
    • NewbornOutcomes.get_and_store_newborn_item_codes()
    • NewbornOutcomes.initialise_simulation()
    • NewbornOutcomes.eval()
    • NewbornOutcomes.apply_risk_of_congenital_anomaly()
    • NewbornOutcomes.apply_risk_of_neonatal_infection_and_sepsis()
    • NewbornOutcomes.apply_risk_of_encephalopathy()
    • NewbornOutcomes.apply_risk_of_preterm_respiratory_distress_syndrome()
    • NewbornOutcomes.apply_risk_of_not_breathing_at_birth()
    • NewbornOutcomes.scheduled_week_one_postnatal_event()
    • NewbornOutcomes.set_death_status()
    • NewbornOutcomes.set_disability_status()
    • NewbornOutcomes.essential_newborn_care()
    • NewbornOutcomes.breast_feeding()
    • NewbornOutcomes.kangaroo_mother_care()
    • NewbornOutcomes.hiv_screening_for_at_risk_newborns()
    • NewbornOutcomes.apply_effect_of_neonatal_resus()
    • NewbornOutcomes.assessment_and_treatment_newborn_sepsis()
    • NewbornOutcomes.link_twins()
    • NewbornOutcomes.schedule_pnc()
    • NewbornOutcomes.on_birth()
    • NewbornOutcomes.on_hsi_alert()
    • NewbornOutcomes.report_daly_values()
    • NewbornOutcomes.run_if_care_of_the_receives_postnatal_check_cant_run()
  • HSI_NewbornOutcomes_ReceivesPostnatalCheck
    • HSI_NewbornOutcomes_ReceivesPostnatalCheck.__init__()
    • HSI_NewbornOutcomes_ReceivesPostnatalCheck.apply()
    • HSI_NewbornOutcomes_ReceivesPostnatalCheck.never_ran()
    • HSI_NewbornOutcomes_ReceivesPostnatalCheck.did_not_run()
    • HSI_NewbornOutcomes_ReceivesPostnatalCheck.not_available()
    • HSI_NewbornOutcomes_ReceivesPostnatalCheck._get_facility_level_for_pnc()
  • HSI_NewbornOutcomes_NeonatalWardInpatientCare
    • HSI_NewbornOutcomes_NeonatalWardInpatientCare.__init__()
    • HSI_NewbornOutcomes_NeonatalWardInpatientCare.apply()
    • HSI_NewbornOutcomes_NeonatalWardInpatientCare.did_not_run()
    • HSI_NewbornOutcomes_NeonatalWardInpatientCare.not_available()
  • BreastfeedingStatusUpdateEventSixMonths
    • BreastfeedingStatusUpdateEventSixMonths.__init__()
    • BreastfeedingStatusUpdateEventSixMonths.apply()
  • BreastfeedingStatusUpdateEventTwoYears
    • BreastfeedingStatusUpdateEventTwoYears.__init__()
    • BreastfeedingStatusUpdateEventTwoYears.apply()
• tlo.methods.newborn_outcomes_lm module
• tlo.methods.oesophagealcancer module
  • OesophagealCancer
    • OesophagealCancer.__init__()
    • OesophagealCancer.read_parameters()
    • OesophagealCancer.initialise_population()
    • OesophagealCancer.initialise_simulation()
    • OesophagealCancer.on_birth()
    • OesophagealCancer.on_hsi_alert()
    • OesophagealCancer.report_daly_values()
    • OesophagealCancer.do_at_generic_first_appt()
  • OesCancerMainPollingEvent
    • OesCancerMainPollingEvent.__init__()
    • OesCancerMainPollingEvent.apply()
  • HSI_OesophagealCancer_Investigation_Following_Dysphagia
    • HSI_OesophagealCancer_Investigation_Following_Dysphagia.__init__()
    • HSI_OesophagealCancer_Investigation_Following_Dysphagia.apply()
  • HSI_OesophagealCancer_StartTreatment
    • HSI_OesophagealCancer_StartTreatment.__init__()
    • HSI_OesophagealCancer_StartTreatment.apply()
  • HSI_OesophagealCancer_PostTreatmentCheck
    • HSI_OesophagealCancer_PostTreatmentCheck.__init__()
    • HSI_OesophagealCancer_PostTreatmentCheck.apply()
  • HSI_OesophagealCancer_PalliativeCare
    • HSI_OesophagealCancer_PalliativeCare.__init__()
    • HSI_OesophagealCancer_PalliativeCare.apply()
  • OesCancerLoggingEvent
    • OesCancerLoggingEvent.__init__()
    • OesCancerLoggingEvent.apply()
• tlo.methods.other_adult_cancers module
  • OtherAdultCancer
    • OtherAdultCancer.__init__()
    • OtherAdultCancer.read_parameters()
    • OtherAdultCancer.initialise_population()
    • OtherAdultCancer.initialise_simulation()
    • OtherAdultCancer.on_birth()
    • OtherAdultCancer.on_hsi_alert()
    • OtherAdultCancer.report_daly_values()
    • OtherAdultCancer.do_at_generic_first_appt()
  • OtherAdultCancerMainPollingEvent
    • OtherAdultCancerMainPollingEvent.__init__()
    • OtherAdultCancerMainPollingEvent.apply()
  • HSI_OtherAdultCancer_Investigation_Following_early_other_adult_ca_symptom
    • HSI_OtherAdultCancer_Investigation_Following_early_other_adult_ca_symptom.__init__()
    • HSI_OtherAdultCancer_Investigation_Following_early_other_adult_ca_symptom.apply()
  • HSI_OtherAdultCancer_StartTreatment
    • HSI_OtherAdultCancer_StartTreatment.__init__()
    • HSI_OtherAdultCancer_StartTreatment.apply()
    • HSI_OtherAdultCancer_StartTreatment.did_not_run()
  • HSI_OtherAdultCancer_PostTreatmentCheck
    • HSI_OtherAdultCancer_PostTreatmentCheck.__init__()
    • HSI_OtherAdultCancer_PostTreatmentCheck.apply()
    • HSI_OtherAdultCancer_PostTreatmentCheck.did_not_run()
  • HSI_OtherAdultCancer_PalliativeCare
    • HSI_OtherAdultCancer_PalliativeCare.__init__()
    • HSI_OtherAdultCancer_PalliativeCare.apply()
    • HSI_OtherAdultCancer_PalliativeCare.did_not_run()
  • OtherAdultCancerLoggingEvent
    • OtherAdultCancerLoggingEvent.__init__()
    • OtherAdultCancerLoggingEvent.apply()
• tlo.methods.postnatal_supervisor module
  • PostnatalSupervisor
    • PostnatalSupervisor.__init__()
    • PostnatalSupervisor.read_parameters()
    • PostnatalSupervisor.initialise_population()
    • PostnatalSupervisor.initialise_simulation()
    • PostnatalSupervisor.on_birth()
    • PostnatalSupervisor.further_on_birth_postnatal_supervisor()
    • PostnatalSupervisor.on_hsi_alert()
    • PostnatalSupervisor.report_daly_values()
    • PostnatalSupervisor.apply_linear_model()
    • PostnatalSupervisor.set_postnatal_complications_mothers()
    • PostnatalSupervisor.apply_risk_of_neonatal_complications_in_week_one()
    • PostnatalSupervisor.set_postnatal_complications_neonates()
    • PostnatalSupervisor.apply_risk_of_maternal_or_neonatal_death_postnatal()
  • PostnatalSupervisorEvent
    • PostnatalSupervisorEvent.__init__()
    • PostnatalSupervisorEvent.apply()
  • PostnatalWeekOneMaternalEvent
    • PostnatalWeekOneMaternalEvent.__init__()
    • PostnatalWeekOneMaternalEvent.apply()
  • PostnatalWeekOneNeonatalEvent
    • PostnatalWeekOneNeonatalEvent.__init__()
    • PostnatalWeekOneNeonatalEvent.apply()
  • HSI_PostnatalSupervisor_TreatmentForObstetricFistula
    • HSI_PostnatalSupervisor_TreatmentForObstetricFistula.__init__()
    • HSI_PostnatalSupervisor_TreatmentForObstetricFistula.apply()
• tlo.methods.postnatal_supervisor_lm module
• tlo.methods.pregnancy_helper_functions module
• tlo.methods.pregnancy_supervisor module
  • PregnancySupervisor
    • PregnancySupervisor.__init__()
    • PregnancySupervisor.read_parameters()
    • PregnancySupervisor.initialise_population()
    • PregnancySupervisor.initialise_simulation()
    • PregnancySupervisor.on_birth()
    • PregnancySupervisor.further_on_birth_pregnancy_supervisor()
    • PregnancySupervisor.on_hsi_alert()
    • PregnancySupervisor.report_daly_values()
    • PregnancySupervisor.pregnancy_supervisor_property_reset()
    • PregnancySupervisor.apply_linear_model()
    • PregnancySupervisor.schedule_anc_one()
    • PregnancySupervisor.apply_risk_of_spontaneous_abortion()
    • PregnancySupervisor.apply_risk_of_induced_abortion()
    • PregnancySupervisor.do_after_abortion()
    • PregnancySupervisor.apply_risk_of_abortion_complications()
    • PregnancySupervisor.apply_risk_of_anaemia()
    • PregnancySupervisor.apply_risk_of_gestational_diabetes()
    • PregnancySupervisor.apply_risk_of_hypertensive_disorders()
    • PregnancySupervisor.apply_risk_of_progression_of_hypertension()
    • PregnancySupervisor.apply_risk_of_death_from_hypertension()
    • PregnancySupervisor.apply_risk_of_placental_abruption()
    • PregnancySupervisor.apply_risk_of_antepartum_haemorrhage()
    • PregnancySupervisor.apply_risk_of_premature_rupture_of_membranes_and_chorioamnionitis()
    • PregnancySupervisor.apply_risk_of_preterm_labour()
    • PregnancySupervisor.update_variables_post_still_birth_for_data_frame()
    • PregnancySupervisor.update_variables_post_still_birth_for_individual()
    • PregnancySupervisor.apply_risk_of_still_birth()
    • PregnancySupervisor.induction_care_seeking_and_still_birth_risk()
    • PregnancySupervisor.care_seeking_pregnancy_loss_complications()
    • PregnancySupervisor.apply_risk_of_death_from_monthly_complications()
    • PregnancySupervisor.schedule_first_anc_contact_for_new_pregnancy()
    • PregnancySupervisor.do_at_generic_first_appt_emergency()
  • PregnancySupervisorEvent
    • PregnancySupervisorEvent.__init__()
    • PregnancySupervisorEvent.apply()
  • EctopicPregnancyEvent
    • EctopicPregnancyEvent.__init__()
    • EctopicPregnancyEvent.apply()
  • EctopicPregnancyRuptureEvent
    • EctopicPregnancyRuptureEvent.__init__()
    • EctopicPregnancyRuptureEvent.apply()
  • EarlyPregnancyLossDeathEvent
    • EarlyPregnancyLossDeathEvent.__init__()
    • EarlyPregnancyLossDeathEvent.apply()
  • GestationalDiabetesGlycaemicControlEvent
    • GestationalDiabetesGlycaemicControlEvent.__init__()
    • GestationalDiabetesGlycaemicControlEvent.apply()
  • SyphilisInPregnancyEvent
    • SyphilisInPregnancyEvent.__init__()
    • SyphilisInPregnancyEvent.apply()
  • ParameterUpdateEvent
    • ParameterUpdateEvent.__init__()
    • ParameterUpdateEvent.apply()
  • PregnancyAnalysisEvent
    • PregnancyAnalysisEvent.__init__()
    • PregnancyAnalysisEvent.apply()
  • PregnancyLoggingEvent
    • PregnancyLoggingEvent.__init__()
    • PregnancyLoggingEvent.apply()
• tlo.methods.pregnancy_supervisor_lm module
• tlo.methods.prostate_cancer module
  • ProstateCancer
    • ProstateCancer.__init__()
    • ProstateCancer.read_parameters()
    • ProstateCancer.initialise_population()
    • ProstateCancer.initialise_simulation()
    • ProstateCancer.on_birth()
    • ProstateCancer.on_hsi_alert()
    • ProstateCancer.report_daly_values()
    • ProstateCancer.do_at_generic_first_appt()
  • ProstateCancerMainPollingEvent
    • ProstateCancerMainPollingEvent.__init__()
    • ProstateCancerMainPollingEvent.apply()
  • HSI_ProstateCancer_Investigation_Following_Urinary_Symptoms
    • HSI_ProstateCancer_Investigation_Following_Urinary_Symptoms.__init__()
    • HSI_ProstateCancer_Investigation_Following_Urinary_Symptoms.apply()
  • HSI_ProstateCancer_Investigation_Following_Pelvic_Pain
    • HSI_ProstateCancer_Investigation_Following_Pelvic_Pain.__init__()
    • HSI_ProstateCancer_Investigation_Following_Pelvic_Pain.apply()
  • HSI_ProstateCancer_Investigation_Following_psa_positive
    • HSI_ProstateCancer_Investigation_Following_psa_positive.__init__()
    • HSI_ProstateCancer_Investigation_Following_psa_positive.apply()
  • HSI_ProstateCancer_StartTreatment
    • HSI_ProstateCancer_StartTreatment.__init__()
    • HSI_ProstateCancer_StartTreatment.apply()
  • HSI_ProstateCancer_PostTreatmentCheck
    • HSI_ProstateCancer_PostTreatmentCheck.__init__()
    • HSI_ProstateCancer_PostTreatmentCheck.apply()
  • HSI_ProstateCancer_PalliativeCare
    • HSI_ProstateCancer_PalliativeCare.__init__()
    • HSI_ProstateCancer_PalliativeCare.apply()
  • ProstateCancerLoggingEvent
    • ProstateCancerLoggingEvent.__init__()
    • ProstateCancerLoggingEvent.apply()
• tlo.methods.rti module
  • RTI
    • RTI.__init__()
    • RTI.read_parameters()
    • RTI.rti_injury_diagnosis()
    • RTI.initialise_population()
    • RTI.initialise_simulation()
    • RTI.rti_do_when_diagnosed()
    • RTI.rti_do_for_major_surgeries()
    • RTI.rti_do_for_minor_surgeries()
    • RTI.rti_acute_pain_management()
    • RTI.rti_ask_for_suture_kit()
    • RTI.rti_ask_for_shock_treatment()
    • RTI.rti_ask_for_burn_treatment()
    • RTI.rti_ask_for_fracture_casts()
    • RTI.rti_ask_for_open_fracture_treatment()
    • RTI.rti_ask_for_tetanus()
    • RTI.schedule_hsi_event_for_tomorrow()
    • RTI.rti_find_injury_column()
    • RTI.rti_find_all_columns_of_treated_injuries()
    • RTI.rti_assign_daly_weights()
    • RTI.rti_alter_daly_post_treatment()
    • RTI.rti_swap_injury_daly_upon_treatment()
    • RTI.rti_determine_LOS()
    • RTI.rti_find_and_count_injuries()
    • RTI.rti_treated_injuries()
    • RTI.on_birth()
    • RTI.look_up_consumable_item_codes()
    • RTI.on_hsi_alert()
    • RTI.report_daly_values()
    • RTI.rti_assign_injuries()
    • RTI._common_first_appt_steps()
    • RTI.do_at_generic_first_appt()
    • RTI.do_at_generic_first_appt_emergency()
  • RTIPollingEvent
    • RTIPollingEvent.__init__()
    • RTIPollingEvent.apply()
  • RTI_Check_Death_No_Med
    • RTI_Check_Death_No_Med.__init__()
    • RTI_Check_Death_No_Med.apply()
  • RTI_Recovery_Event
    • RTI_Recovery_Event.__init__()
    • RTI_Recovery_Event.apply()
  • HSI_RTI_Imaging_Event
    • HSI_RTI_Imaging_Event.__init__()
    • HSI_RTI_Imaging_Event.apply()
    • HSI_RTI_Imaging_Event.did_not_run()
  • HSI_RTI_Medical_Intervention
    • HSI_RTI_Medical_Intervention.__init__()
    • HSI_RTI_Medical_Intervention.apply()
    • HSI_RTI_Medical_Intervention.did_not_run()
  • HSI_RTI_Shock_Treatment
    • HSI_RTI_Shock_Treatment.__init__()
    • HSI_RTI_Shock_Treatment.apply()
    • HSI_RTI_Shock_Treatment.did_not_run()
  • HSI_RTI_Fracture_Cast
    • HSI_RTI_Fracture_Cast.__init__()
    • HSI_RTI_Fracture_Cast.apply()
    • HSI_RTI_Fracture_Cast.did_not_run()
  • HSI_RTI_Open_Fracture_Treatment
    • HSI_RTI_Open_Fracture_Treatment.__init__()
    • HSI_RTI_Open_Fracture_Treatment.apply()
    • HSI_RTI_Open_Fracture_Treatment.did_not_run()
  • HSI_RTI_Suture
    • HSI_RTI_Suture.__init__()
    • HSI_RTI_Suture.apply()
    • HSI_RTI_Suture.did_not_run()
  • HSI_RTI_Burn_Management
    • HSI_RTI_Burn_Management.__init__()
    • HSI_RTI_Burn_Management.apply()
    • HSI_RTI_Burn_Management.did_not_run()
  • HSI_RTI_Tetanus_Vaccine
    • HSI_RTI_Tetanus_Vaccine.__init__()
    • HSI_RTI_Tetanus_Vaccine.apply()
    • HSI_RTI_Tetanus_Vaccine.did_not_run()
  • HSI_RTI_Acute_Pain_Management
    • HSI_RTI_Acute_Pain_Management.__init__()
    • HSI_RTI_Acute_Pain_Management.apply()
    • HSI_RTI_Acute_Pain_Management.did_not_run()
  • HSI_RTI_Major_Surgeries
    • HSI_RTI_Major_Surgeries.__init__()
    • HSI_RTI_Major_Surgeries.apply()
    • HSI_RTI_Major_Surgeries.did_not_run()
  • HSI_RTI_Minor_Surgeries
    • HSI_RTI_Minor_Surgeries.__init__()
    • HSI_RTI_Minor_Surgeries.apply()
    • HSI_RTI_Minor_Surgeries.did_not_run()
  • RTI_Medical_Intervention_Death_Event
    • RTI_Medical_Intervention_Death_Event.__init__()
    • RTI_Medical_Intervention_Death_Event.apply()
  • RTI_No_Lifesaving_Medical_Intervention_Death_Event
    • RTI_No_Lifesaving_Medical_Intervention_Death_Event.__init__()
    • RTI_No_Lifesaving_Medical_Intervention_Death_Event.apply()
  • RTI_Logging_Event
    • RTI_Logging_Event.__init__()
    • RTI_Logging_Event.apply()
• tlo.methods.scenario_switcher module
  • ImprovedHealthSystemAndCareSeekingScenarioSwitcher
    • ImprovedHealthSystemAndCareSeekingScenarioSwitcher.__init__()
    • ImprovedHealthSystemAndCareSeekingScenarioSwitcher.read_parameters()
    • ImprovedHealthSystemAndCareSeekingScenarioSwitcher.pre_initialise_population()
    • ImprovedHealthSystemAndCareSeekingScenarioSwitcher.update_parameters()
    • ImprovedHealthSystemAndCareSeekingScenarioSwitcher.initialise_population()
    • ImprovedHealthSystemAndCareSeekingScenarioSwitcher.initialise_simulation()
    • ImprovedHealthSystemAndCareSeekingScenarioSwitcher.on_birth()
  • ScenarioSwitchEvent
    • ScenarioSwitchEvent.__init__()
    • ScenarioSwitchEvent.apply()
• tlo.methods.schisto module
  • Schisto
    • Schisto.__init__()
    • Schisto.read_parameters()
    • Schisto.pre_initialise_population()
    • Schisto.initialise_population()
    • Schisto.initialise_simulation()
    • Schisto.on_birth()
    • Schisto.report_daly_values()
    • Schisto.do_effect_of_treatment()
    • Schisto._load_parameters_from_workbook()
    • Schisto._register_symptoms()
    • Schisto._get_disability_weight()
    • Schisto._get_item_code_for_praziquantel()
    • Schisto._schedule_mda_events()
    • Schisto.do_at_generic_first_appt()
  • SchistoInfectionWormBurdenEvent
    • SchistoInfectionWormBurdenEvent.__init__()
    • SchistoInfectionWormBurdenEvent.apply()
  • SchistoMatureWorms
    • SchistoMatureWorms.__init__()
    • SchistoMatureWorms.apply()
  • SchistoWormsNatDeath
    • SchistoWormsNatDeath.__init__()
    • SchistoWormsNatDeath.apply()
  • SchistoMDAEvent
    • SchistoMDAEvent.__init__()
    • SchistoMDAEvent.apply()
    • SchistoMDAEvent._select_recipients()
  • HSI_Schisto_TestingFollowingSymptoms
    • HSI_Schisto_TestingFollowingSymptoms.__init__()
    • HSI_Schisto_TestingFollowingSymptoms.apply()
  • HSI_Schisto_TreatmentFollowingDiagnosis
    • HSI_Schisto_TreatmentFollowingDiagnosis.__init__()
    • HSI_Schisto_TreatmentFollowingDiagnosis.apply()
  • HSI_Schisto_MDA
    • HSI_Schisto_MDA.__init__()
    • HSI_Schisto_MDA.apply()
  • SchistoLoggingEvent
    • SchistoLoggingEvent.__init__()
    • SchistoLoggingEvent.apply()
• tlo.methods.simplified_births module
  • SimplifiedBirths
    • SimplifiedBirths.__init__()
    • SimplifiedBirths.read_parameters()
    • SimplifiedBirths.initialise_population()
    • SimplifiedBirths.initialise_simulation()
    • SimplifiedBirths.on_birth()
  • SimplifiedBirthsPoll
    • SimplifiedBirthsPoll.__init__()
    • SimplifiedBirthsPoll.apply()
    • SimplifiedBirthsPoll.set_new_pregnancies()
    • SimplifiedBirthsPoll.do_deliveries()
    • SimplifiedBirthsPoll.update_breastfed_status()
• tlo.methods.skeleton module
  • Skeleton
    • Skeleton.__init__()
    • Skeleton.read_parameters()
    • Skeleton.initialise_population()
    • Skeleton.initialise_simulation()
    • Skeleton.on_birth()
    • Skeleton.report_daly_values()
    • Skeleton.on_hsi_alert()
  • Skeleton_Event
    • Skeleton_Event.__init__()
    • Skeleton_Event.apply()
  • Skeleton_LoggingEvent
    • Skeleton_LoggingEvent.__init__()
    • Skeleton_LoggingEvent.apply()
  • HSI_Skeleton_Example_Interaction
    • HSI_Skeleton_Example_Interaction.__init__()
    • HSI_Skeleton_Example_Interaction.apply()
    • HSI_Skeleton_Example_Interaction.did_not_run()
    • HSI_Skeleton_Example_Interaction.never_ran()
• tlo.methods.stunting module
  • Overview
  • Stunting
    • Stunting.__init__()
    • Stunting.read_parameters()
    • Stunting.initialise_population()
    • Stunting.initialise_simulation()
    • Stunting.on_birth()
    • Stunting.look_up_consumable_item_codes()
    • Stunting.do_onset()
    • Stunting.do_progression()
    • Stunting.do_recovery()
    • Stunting.do_treatment()
    • Stunting.do_at_generic_first_appt()
  • StuntingPollingEvent
    • StuntingPollingEvent.__init__()
    • StuntingPollingEvent.apply()
    • StuntingPollingEvent.apply_model()
  • StuntingLoggingEvent
    • StuntingLoggingEvent.__init__()
    • StuntingLoggingEvent.apply()
  • HSI_Stunting_ComplementaryFeeding
    • HSI_Stunting_ComplementaryFeeding.__init__()
    • HSI_Stunting_ComplementaryFeeding.apply()
  • StuntingPropertiesOfOtherModules
    • StuntingPropertiesOfOtherModules.__init__()
    • StuntingPropertiesOfOtherModules.read_parameters()
    • StuntingPropertiesOfOtherModules.initialise_population()
    • StuntingPropertiesOfOtherModules.initialise_simulation()
    • StuntingPropertiesOfOtherModules.on_birth()
• tlo.methods.symptommanager module
  • SymptomManager
    • SymptomManager.__init__()
    • SymptomManager.get_column_name_for_symptom()
    • SymptomManager.read_parameters()
    • SymptomManager.register_symptom()
    • SymptomManager.register_generic_symptoms()
    • SymptomManager.pre_initialise_population()
    • SymptomManager.initialise_population()
    • SymptomManager.initialise_simulation()
    • SymptomManager.on_birth()
    • SymptomManager.change_symptom()
    • SymptomManager.who_has()
    • SymptomManager.who_not_have()
    • SymptomManager.has_what()
    • SymptomManager.have_what()
    • SymptomManager.causes_of()
    • SymptomManager.clear_symptoms()
    • SymptomManager.caused_by()
    • SymptomManager.get_persons_with_newly_onset_symptoms()
    • SymptomManager.reset_persons_with_newly_onset_symptoms()
  • SymptomManager_AutoOnsetEvent
    • SymptomManager_AutoOnsetEvent.__init__()
    • SymptomManager_AutoOnsetEvent.apply()
  • SymptomManager_AutoResolveEvent
    • SymptomManager_AutoResolveEvent.__init__()
    • SymptomManager_AutoResolveEvent.apply()
  • SymptomManager_SpuriousSymptomOnset
    • SymptomManager_SpuriousSymptomOnset.__init__()
    • SymptomManager_SpuriousSymptomOnset.get_generic_symptoms_dict()
    • SymptomManager_SpuriousSymptomOnset.apply()
  • SymptomManager_SpuriousSymptomResolve
    • SymptomManager_SpuriousSymptomResolve.__init__()
    • SymptomManager_SpuriousSymptomResolve.schedule_symptom_resolve()
    • SymptomManager_SpuriousSymptomResolve.apply()
• tlo.methods.tb module
  • Tb
    • Tb.__init__()
    • Tb.read_parameters()
    • Tb.pre_initialise_population()
    • Tb._build_linear_models()
    • Tb.send_for_screening_general()
    • Tb.select_tb_test()
    • Tb.get_consumables_for_dx_and_tx()
    • Tb.initialise_population()
    • Tb.initialise_simulation()
    • Tb.update_parameters_for_program_scaleup()
    • Tb.on_birth()
    • Tb.report_daly_values()
    • Tb.calculate_untreated_proportion()
    • Tb.assign_active_tb()
    • Tb.consider_ipt_for_those_initiating_art()
    • Tb.relapse_event()
    • Tb.end_treatment()
    • Tb.check_config_of_properties()
  • TbActiveCasePoll
    • TbActiveCasePoll.__init__()
    • TbActiveCasePoll.apply()
  • TbRegularEvents
    • TbRegularEvents.__init__()
    • TbRegularEvents.apply()
  • TbScaleUpEvent
    • TbScaleUpEvent.__init__()
    • TbScaleUpEvent.apply()
  • TbActiveEvent
    • TbActiveEvent.__init__()
    • TbActiveEvent.apply()
  • TbSelfCureEvent
    • TbSelfCureEvent.__init__()
    • TbSelfCureEvent.apply()
  • HSI_Tb_ScreeningAndRefer
    • HSI_Tb_ScreeningAndRefer.__init__()
    • HSI_Tb_ScreeningAndRefer.apply()
  • HSI_Tb_ClinicalDiagnosis
    • HSI_Tb_ClinicalDiagnosis.__init__()
    • HSI_Tb_ClinicalDiagnosis.apply()
  • HSI_Tb_Culture
    • HSI_Tb_Culture.__init__()
    • HSI_Tb_Culture.apply()
  • HSI_Tb_Xray_level1b
    • HSI_Tb_Xray_level1b.__init__()
    • HSI_Tb_Xray_level1b.apply()
  • HSI_Tb_Xray_level2
    • HSI_Tb_Xray_level2.__init__()
    • HSI_Tb_Xray_level2.apply()
  • HSI_Tb_StartTreatment
    • HSI_Tb_StartTreatment.__init__()
    • HSI_Tb_StartTreatment.apply()
    • HSI_Tb_StartTreatment.select_treatment()
  • HSI_Tb_FollowUp
    • HSI_Tb_FollowUp.__init__()
    • HSI_Tb_FollowUp.apply()
  • HSI_Tb_Start_or_Continue_Ipt
    • HSI_Tb_Start_or_Continue_Ipt.__init__()
    • HSI_Tb_Start_or_Continue_Ipt.apply()
  • HSI_Tb_EndOfLifeCare
    • HSI_Tb_EndOfLifeCare.__init__()
    • HSI_Tb_EndOfLifeCare.apply()
  • Tb_DecisionToContinueIPT
    • Tb_DecisionToContinueIPT.__init__()
    • Tb_DecisionToContinueIPT.apply()
  • TbDecideDeathEvent
    • TbDecideDeathEvent.__init__()
    • TbDecideDeathEvent.apply()
  • TbDeathEvent
    • TbDeathEvent.__init__()
    • TbDeathEvent.apply()
  • TbLoggingEvent
    • TbLoggingEvent.__init__()
    • TbLoggingEvent.apply()
  • TbCheckPropertiesEvent
    • TbCheckPropertiesEvent.__init__()
    • TbCheckPropertiesEvent.apply()
  • DummyTbModule
    • DummyTbModule.__init__()
    • DummyTbModule.read_parameters()
    • DummyTbModule.initialise_population()
    • DummyTbModule.initialise_simulation()
    • DummyTbModule.on_birth()
• tlo.methods.wasting module
  • Wasting
    • Wasting.__init__()
    • Wasting.read_parameters()
    • Wasting.initialise_population()
    • Wasting.initialise_simulation()
    • Wasting.on_birth()

Module contents

class Metadata(value)

Bases: Enum

DISEASE_MODULE = 1

USES_SYMPTOMMANAGER = 2

USES_HEALTHSYSTEM = 3

USES_HEALTHBURDEN = 4