tlo.analysis package

Submodules

• tlo.analysis.hsi_events module
  • is_valid_hsi_event_subclass()
  • get_hsi_event_classes_per_module()
  • get_details_of_defined_hsi_events()
  • sort_hsi_event_details()
  • format_hsi_event_details_as_csv()
  • format_hsi_event_details_as_table()
  • format_hsi_event_details_as_list()
  • merge_hsi_event_details()
  • get_all_defined_hsi_events_as_dataframe()
  • main()
• tlo.analysis.life_expectancy module
  • calculate_probability_of_dying()
  • get_life_expectancy_estimates()
  • get_probability_of_premature_death()
• tlo.analysis.performance module
  • PerformanceMonitor
    • PerformanceMonitor.read_parameters()
    • PerformanceMonitor.initialise_simulation()
    • PerformanceMonitor.on_birth()
    • PerformanceMonitor.on_simulation_end()
    • PerformanceMonitor.parameters
  • SaveSimulation
    • SaveSimulation.apply()
  • LogPerfProfile
    • LogPerfProfile.apply()
  • make_pickle_filename()
  • profile_statistics()
  • memory_statistics()
• tlo.analysis.utils module
  • parse_log_file()
  • merge_log_files()
  • write_log_to_excel()
  • make_calendar_period_lookup()
  • make_calendar_period_type()
  • make_age_grp_lookup()
  • make_age_grp_types()
  • to_age_group()
  • get_scenario_outputs()
  • get_scenario_info()
  • load_pickled_dataframes()
  • extract_draw_names()
  • extract_params()
  • extract_results()
  • compute_summary_statistics()
  • summarize()
  • get_grid()
  • format_gbd()
  • create_pickles_locally()
  • compare_number_of_deaths()
  • flatten_multi_index_series_into_dict_for_logging()
  • unflatten_flattened_multi_index_in_logging()
  • LogsDict
    • LogsDict.items()
    • LogsDict.keys()
    • LogsDict.values()
  • get_filtered_treatment_ids()
  • colors_in_matplotlib()
  • get_coarse_appt_type()
  • order_of_coarse_appt()
  • get_color_coarse_appt()
  • order_of_short_treatment_ids()
  • get_color_short_treatment_id()
  • order_of_cause_of_death_or_daly_label()
  • get_color_cause_of_death_or_daly_label()
  • squarify_neat()
  • get_root_path()
  • bin_hsi_event_details()
  • compute_mean_across_runs()
  • plot_stacked_bar_chart()
  • plot_clustered_stacked()
  • get_mappers_in_fullmodel()
  • get_parameters_for_status_quo()
  • get_parameters_for_standard_mode2_runs()
  • get_parameters_for_hrh_historical_scaling_and_rescaling_for_mode2()
  • get_parameters_for_improved_healthsystem_and_healthcare_seeking()
  • mix_scenarios()

Module contents