Diarrhoea (.xlsx) ================= :download:`Download original .xlsx file from GitHub ` .. contents:: Parameter_values ---------------- ==== =============================================================== ========================================= ========================================================================================= ============ ============================================= ================== ============ .. parameter\_name value Notes/References Unnamed: 3 Target values for 12 monthly incidence rate Unnamed: 5 Unnamed: 6 ==== =============================================================== ========================================= ========================================================================================= ============ ============================================= ================== ============ 0 base\_inc\_rate\_diarrhoea\_by\_rotavirus [0.175245863,0.097007598,0.009324] Platts-Mills et al 2018, Liu et al, 2016, Nasin, et al. 2019 0.175245863 0.097007598 0.009324 1 base\_inc\_rate\_diarrhoea\_by\_shigella [0.117936461999999,0.078794104,0.093018] Platts-Mills et al 2018, Liu et al, 2016, Nasin, et al. 2019 0.117936461999999 0.078794104 0.093018 2 base\_inc\_rate\_diarrhoea\_by\_adenovirus [0.0586618,0.058661803,0.006438] Platts-Mills et al 2018, Liu et al, 2016, Nasin, et al. 2019 0.0586618 0.058661803 0.006438 3 base\_inc\_rate\_diarrhoea\_by\_cryptosporidium [0.030886699,0.0117923629999999,0.004662] Platts-Mills et al 2018, Liu et al, 2016, Nasin, et al. 2019 0.030886699 0.0117923629999999 0.004662 4 base\_inc\_rate\_diarrhoea\_by\_campylobacter [0.098663257,0.027915478,0.004884] Platts-Mills et al 2018, Liu et al, 2016, Nasin, et al. 2019 0.098663257 0.027915478 0.004884 5 base\_inc\_rate\_diarrhoea\_by\_ETEC [0.27925146,0.170477152,0.019758] Platts-Mills et al 2018, Liu et al, 2016, Nasin, et al. 2019 0.27925146 0.170477152 0.019758 6 base\_inc\_rate\_diarrhoea\_by\_sapovirus [0.100972179,0.132603114,0.00555] Platts-Mills et al 2018, Liu et al, 2016, Nasin, et al. 2019 0.100972179 0.132603114 0.00555 7 base\_inc\_rate\_diarrhoea\_by\_norovirus [0.204864004,0.066146727,0.000888] Platts-Mills et al 2018, Liu et al, 2016, Nasin, et al. 2019 0.204864004 0.066146727 0.000888 8 base\_inc\_rate\_diarrhoea\_by\_astrovirus [0.054208352,0.035974076,0.001332] Platts-Mills et al 2018, Liu et al, 2016, Nasin, et al. 2019 0.054208352 0.035974076 0.001332 9 base\_inc\_rate\_diarrhoea\_by\_tEPEC [0.0608224569999999,0.022716889,0.001998] Platts-Mills et al 2018, Liu et al, 2016, Nasin, et al. 2019 0.0608224569999999 0.022716889 0.001998 10 rr\_diarrhoea\_HHhandwashing 0.7 Wolf et al. 2018 11 rr\_diarrhoea\_improved\_sanitation 0.75 Wolf et al. 2018 12 rr\_diarrhoea\_clean\_water 0.67 Wolf et al. 2018 13 rr\_diarrhoea\_exclusive\_vs\_partial\_breastfeeding\_<6mo 1.68 Lamberti et al. 2011 14 rr\_diarrhoea\_exclusive\_vs\_no\_breastfeeding\_<6mo 2.65 Lamberti et al. 2011 15 rr\_diarrhoea\_any\_vs\_no\_breastfeeding\_6\_11mo 1.32 Lamberti et al. 2011 16 rr\_diarrhoea\_untreated\_HIV 5.4 Groome and Madhi 2011 17 rr\_diarrhoea\_SAM 1.2 Black et al. 2013 18 19 proportion\_AWD\_in\_rotavirus 0.97668 Platts-Mills et al 2018 20 proportion\_AWD\_in\_shigella 0.861942 Platts-Mills et al 2018 21 proportion\_AWD\_in\_adenovirus 0.950061 Platts-Mills et al 2018 22 proportion\_AWD\_in\_cryptosporidium 0.970984 Platts-Mills et al 2018 23 proportion\_AWD\_in\_campylobacter 0.896768 Platts-Mills et al 2018 24 proportion\_AWD\_in\_ETEC 0.950465 Platts-Mills et al 2018 25 proportion\_AWD\_in\_sapovirus 0.966385 Platts-Mills et al 2018 26 proportion\_AWD\_in\_norovirus 0.961643 Platts-Mills et al 2018 27 proportion\_AWD\_in\_astrovirus 0.974147 Platts-Mills et al 2018 28 proportion\_AWD\_in\_tEPEC 0.961485 Platts-Mills et al 2018 29 30 prob\_dehydration\_by\_rotavirus 0.153093 Platts-Mills et al 2018 31 prob\_dehydration\_by\_shigella 0.102962 Platts-Mills et al 2018 32 prob\_dehydration\_by\_adenovirus 0.079524 Platts-Mills et al 2018 33 prob\_dehydration\_by\_cryptosporidium 0.121458 Platts-Mills et al 2018 34 prob\_dehydration\_by\_campylobacter 0.072808 Platts-Mills et al 2018 35 prob\_dehydration\_by\_ETEC 0.075925 Platts-Mills et al 2018 36 prob\_dehydration\_by\_sapovirus 0.10364 Platts-Mills et al 2018 37 prob\_dehydration\_by\_norovirus 0.090728 Platts-Mills et al 2018 38 prob\_dehydration\_by\_astrovirus 0.122776 Platts-Mills et al 2018 39 prob\_dehydration\_by\_tEPEC 0.113362 Platts-Mills et al 2018 40 probability\_of\_severe\_dehydration\_if\_some\_dehydration 0.167 Levine et al. 2016 41 42 prob\_prolonged\_diarr\_rotavirus 0.117706 Platts-Mills et al 2018 43 prob\_prolonged\_diarr\_shigella 0.165342 Platts-Mills et al 2018 44 prob\_prolonged\_diarr\_adenovirus 0.116406 Platts-Mills et al 2018 45 prob\_prolonged\_diarr\_cryptosporidium 0.169134 Platts-Mills et al 2018 46 prob\_prolonged\_diarr\_campylobacter 0.152206 Platts-Mills et al 2018 47 prob\_prolonged\_diarr\_ETEC 0.114177 Platts-Mills et al 2018 48 prob\_prolonged\_diarr\_sapovirus 0.133209 Platts-Mills et al 2018 49 prob\_prolonged\_diarr\_norovirus 0.118223 Platts-Mills et al 2018 50 prob\_prolonged\_diarr\_astrovirus 0.13511 Platts-Mills et al 2018 51 prob\_prolonged\_diarr\_tEPEC 0.190845 Platts-Mills et al 2018 52 prob\_prolonged\_to\_persistent\_diarr 0.2866 Moore et al. 2010 53 rr\_bec\_persistent\_age>6mo 0.26 Ochoa et al. 2009 54 rr\_bec\_persistent\_HIV 1.7 \* dummy 55 rr\_bec\_persistent\_SAM 1.7 \* dummy 56 rr\_bec\_persistent\_stunted 33.3 Schilling et al 2017 57 min\_dur\_acute 1 \* definitional 58 min\_dur\_prolonged 5 \* definitional 59 min\_dur\_persistent 13 \* definitional 60 max\_dur\_persistent 30 \* definitional 61 62 prob\_fever\_by\_rotavirus 0.384925 Platts-Mills et al 2018 63 prob\_fever\_by\_shigella 0.319876 Platts-Mills et al 2018 64 prob\_fever\_by\_adenovirus 0.271513 Platts-Mills et al 2018 65 prob\_fever\_by\_cryptosporidium 0.322385 Platts-Mills et al 2018 66 prob\_fever\_by\_campylobacter 0.312807 Platts-Mills et al 2018 67 prob\_fever\_by\_ETEC 0.258931 Platts-Mills et al 2018 68 prob\_fever\_by\_sapovirus 0.292276 Platts-Mills et al 2018 69 prob\_fever\_by\_norovirus 0.251071 Platts-Mills et al 2018 70 prob\_fever\_by\_astrovirus 0.195905 Platts-Mills et al 2018 71 prob\_fever\_by\_tEPEC 0.384547 Platts-Mills et al 2018 72 prob\_vomiting\_by\_rotavirus 0.471793 Platts-Mills et al 2018 73 prob\_vomiting\_by\_shigella 0.209852 Platts-Mills et al 2018 74 prob\_vomiting\_by\_adenovirus 0.308677 Platts-Mills et al 2018 75 prob\_vomiting\_by\_cryptosporidium 0.243581 Platts-Mills et al 2018 76 prob\_vomiting\_by\_campylobacter 0.218669 Platts-Mills et al 2018 77 prob\_vomiting\_by\_ETEC 0.283139 Platts-Mills et al 2018 78 prob\_vomiting\_by\_sapovirus 0.303154 Platts-Mills et al 2018 79 prob\_vomiting\_by\_norovirus 0.299343 Platts-Mills et al 2018 80 prob\_vomiting\_by\_astrovirus 0.276018 Platts-Mills et al 2018 81 prob\_vomiting\_by\_tEPEC 0.285661 Platts-Mills et al 2018 82 83 adjustment\_factor\_on\_cfr 3.75 Can be used in fitting. 84 case\_fatality\_rate\_AWD 0.0015 To be calibrated. Guideline values: Bhandari et al 1992 (0.0056); GBD 2016 paper (0.0015) 85 rr\_diarr\_death\_bloody 7.6 Relative CFR for bloody versus non-bloody diarrhoea, per Bhandari et al., 1992 86 rr\_diarr\_death\_age24to59mo 0.38 Walker et al. 2013 87 rr\_diarr\_death\_if\_duration\_longer\_than\_13\_days 0.0035 \* dummy 88 rr\_diarr\_death\_severe\_dehydration 3.45 Levine et al. 2020 89 rr\_diarr\_death\_untreated\_HIV 5.05 Acacio et al. 2016 90 rr\_diarr\_death\_SAM 4.13 Acacio et al. 2016 91 rr\_diarr\_death\_alri 3.51 Acacio et al. 2016 92 rr\_diarr\_death\_cryptosporidium 2.14 Acacio et al. 2016 93 rr\_diarr\_death\_shigella 2.8 Tickell et al. 2017 94 95 sensitivity\_severe\_dehydration\_visual\_inspection 0.77 Levine et al. 2016 96 specificity\_severe\_dehydration\_visual\_inspection 0.67 Levine et al. 2016 97 prob\_hospitalization\_on\_danger\_signs 0.7 \* dummy 98 99 prob\_WHOPlanC\_cures\_dehydration\_if\_severe\_dehydration 0.9 \* dummy 100 prob\_ORS\_cures\_dehydration\_if\_severe\_dehydration 0.721 Pulungsih et al 1992 101 prob\_ORS\_cures\_dehydration\_if\_non\_severe\_dehydration 0.93 Munos et al. 2010 102 prob\_antibiotic\_cures\_dysentery 0.99 Traa et al. 2010 103 number\_of\_days\_reduced\_duration\_with\_zinc 1 Lazzerini and Wanzira et al 2016 104 days\_between\_treatment\_and\_cure 5 105 106 rr\_severe\_dehydration\_due\_to\_rotavirus\_with\_R1\_under1yo 0.63 Soares-Weiser et al. 2019 107 rr\_severe\_dehydration\_due\_to\_rotavirus\_with\_R1\_over1yo 0.35 Soares-Weiser et al. 2019 ==== =============================================================== ========================================= ========================================================================================= ============ ============================================= ================== ============