tlo.methods.stunting module =========================== .. automodule:: tlo.methods.stunting .. autoclass:: Stunting Bases: :class:`tlo.core.Module` **PARAMETERS:** .. list-table:: :widths: 25 25 50 :header-rows: 1 * - Item - Type - Description * - prev_HAZ_distribution_age_0_5mo - LIST - Distribution of HAZ among less than 6 months of age in 2015 (mean, standard deviation) * - prev_HAZ_distribution_age_6_11mo - LIST - Distribution of HAZ among 6 months and 1 year of age in 2015 (mean, standard deviation) * - prev_HAZ_distribution_age_12_23mo - LIST - Distribution of HAZ among 1 year olds in 2015 (mean, standard deviation) * - prev_HAZ_distribution_age_24_35mo - LIST - Distribution of HAZ among 2 year olds in 2015 (mean, standard deviation) * - prev_HAZ_distribution_age_36_47mo - LIST - Distribution of HAZ among 3 year olds in 2015 (mean, standard deviation) * - prev_HAZ_distribution_age_48_59mo - LIST - Distribution of HAZ among 4 year olds in 2015 (mean, standard deviation) * - or_stunting_male - REAL - Odds ratio of stunting if male gender * - or_stunting_preterm_and_AGA - REAL - Odds ratio of stunting if born preterm and adequate for gestational age * - or_stunting_SGA_and_term - REAL - Odds ratio of stunting if born term and small for geatational age * - or_stunting_SGA_and_preterm - REAL - Odds ratio of stunting if born preterm and small for gestational age * - or_stunting_hhwealth_Q5 - REAL - Odds ratio of stunting if household wealth is poorest Q5, ref group Q1 * - or_stunting_hhwealth_Q4 - REAL - Odds ratio of stunting if household wealth is poorer Q4, ref group Q1 * - or_stunting_hhwealth_Q3 - REAL - Odds ratio of stunting if household wealth is middle Q3, ref group Q1 * - or_stunting_hhwealth_Q2 - REAL - Odds ratio of stunting if household wealth is richer Q2, ref group Q1 * - base_inc_rate_stunting_by_agegp - LIST - Baseline incidence rate per year of stunting by age group (1-5, 6-11, 12-23, 24-35, 36-47, 48-59mo * - rr_stunting_preterm_and_AGA - REAL - Relative risk of stunting if born preterm and adequate for gestational age * - rr_stunting_SGA_and_term - REAL - Relative risk of stunting if born term and small for gestational age * - rr_stunting_SGA_and_preterm - REAL - Relative risk of stunting if born preterm and small for gestational age * - rr_stunting_prior_wasting - REAL - Relative risk of stunting if prior wasting in the last 3 months * - rr_stunting_untreated_HIV - REAL - Relative risk of stunting for untreated HIV+ * - rr_stunting_wealth_level - REAL - Relative risk of stunting if wealth-level is greater than 1 compared 1 * - rr_stunting_no_exclusive_breastfeeding - REAL - Relative risk of stunting for not exclusively breastfed babies < 6 months * - rr_stunting_no_continued_breastfeeding - REAL - Relative risk of stunting for not continued breastfed infants 6-24 months * - rr_stunting_per_diarrhoeal_episode - REAL - Relative risk of stunting for recent diarrhoea episode * - r_progression_severe_stunting_by_agegp - LIST - Rates per year of progression to severe stunting by age group (1-5, 6-11, 12-23, 24-35, 36-47, 48-59mo * - rr_progress_severe_stunting_if_prior_wasting - REAL - Relative risk of severe stunting if previously wasted * - rr_progress_severe_stunting_untreated_HIV - REAL - Relative risk of severe stunting for untreated HIV+ * - mean_years_to_1stdev_natural_improvement_in_stunting - REAL - Mean time (in years) to a one standard deviation improvement in stunting without any treatment. * - effectiveness_of_complementary_feeding_education_in_stunting_reduction - REAL - Probability of stunting being reduced by one standard deviation (category) by education about supplementary feeding (but not supplying supplementary feeding consmables). * - effectiveness_of_food_supplementation_in_stunting_reduction - REAL - Probability of stunting being reduced by one standard deviation (category) by supplementary feeding. * - prob_stunting_diagnosed_at_generic_appt - REAL - Probability of a stunted or severely stunted person being checked and correctly diagnosed **PROPERTIES:** .. list-table:: :widths: 25 25 50 :header-rows: 1 * - Item - Type - Description * - un_HAZ_category - CATEGORICAL - Indicator of current stunting status - the height-for-age z-score category:"HAZ>=-2" == No Stunting (within 2 standard deviations of mean); "-3<=HAZ<-2" == Non-Severe Stunting (2-3 standard deviations from mean); "HAZ<-3 == Severe Stunting (more than 3 standard deviations from mean). Possible values are: [HAZ<-3, -3<=HAZ<-2, HAZ>=-2, ] **Class attributes:** INIT_DEPENDENCIES : {'Wasting', 'Hiv', 'Demography', 'Diarrhoea', 'NewbornOutcomes'} METADATA : {, } **Functions (defined or overridden in class Stunting):** .. automethod:: __init__ .. automethod:: read_parameters .. automethod:: initialise_population .. automethod:: initialise_simulation .. automethod:: on_birth .. automethod:: look_up_consumable_item_codes .. automethod:: do_onset .. automethod:: do_progression .. automethod:: do_recovery .. automethod:: do_routine_assessment_for_chronic_undernutrition .. automethod:: do_treatment .. autoclass:: StuntingPollingEvent Bases: :class:`tlo.events.RegularEvent`, :class:`tlo.events.Event`, :class:`tlo.events.PopulationScopeEventMixin` **Class attributes:** __annotations__ : {} **Functions (defined or overridden in class StuntingPollingEvent):** .. automethod:: __init__ .. automethod:: apply .. automethod:: apply_model .. autoclass:: StuntingLoggingEvent Bases: :class:`tlo.events.RegularEvent`, :class:`tlo.events.Event`, :class:`tlo.events.PopulationScopeEventMixin` **Class attributes:** __annotations__ : {} **Functions (defined or overridden in class StuntingLoggingEvent):** .. automethod:: __init__ .. automethod:: apply .. autoclass:: HSI_Stunting_ComplementaryFeeding Bases: :class:`tlo.methods.healthsystem.HSI_Event`, :class:`tlo.events.IndividualScopeEventMixin` **Functions (defined or overridden in class HSI_Stunting_ComplementaryFeeding):** .. automethod:: __init__ .. automethod:: apply .. autoclass:: StuntingPropertiesOfOtherModules Bases: :class:`tlo.core.Module` **PROPERTIES:** .. list-table:: :widths: 25 25 50 :header-rows: 1 * - Item - Type - Description * - hv_inf - BOOL - temporary property * - hv_art - CATEGORICAL - temporary property. Possible values are: [not, on_VL_suppressed, on_not_VL_suppressed, ] * - nb_low_birth_weight_status - CATEGORICAL - temporary property. Possible values are: [extremely_low_birth_weight, very_low_birth_weight, low_birth_weight, normal_birth_weight, ] * - nb_size_for_gestational_age - CATEGORICAL - temporary property. Possible values are: [small_for_gestational_age, average_for_gestational_age, ] * - nb_late_preterm - BOOL - temporary property * - nb_early_preterm - BOOL - temporary property * - nb_breastfeeding_status - CATEGORICAL - temporary property. Possible values are: [none, non_exclusive, exclusive, ] * - un_ever_wasted - BOOL - temporary property * - gi_number_of_episodes - INT - temporary property **Class attributes:** ALTERNATIVE_TO : {'Wasting', 'Hiv', 'Diarrhoea'} INIT_DEPENDENCIES : {'Demography'} **Functions (defined or overridden in class StuntingPropertiesOfOtherModules):** .. automethod:: __init__ .. automethod:: read_parameters .. automethod:: initialise_population .. automethod:: initialise_simulation .. automethod:: on_birth