tlo.methods.other_adult_cancers module ====================================== .. automodule:: tlo.methods.other_adult_cancers .. autoclass:: OtherAdultCancer Bases: :class:`tlo.core.Module` **PARAMETERS:** .. list-table:: :widths: 25 25 50 :header-rows: 1 * - Item - Type - Description * - init_prop_early_other_adult_ca_symptom_other_adult_cancer_by_stage - LIST - initial proportions of those with other adult cancer categories that have other adult_ca_symptom * - in_prop_other_adult_cancer_stage - LIST - initial proportions in other adult cancer stages for person aged 15-29 * - init_prop_with_early_other_adult_ca_symptom_diagnosed_by_stage - LIST - initial proportions of people that have symptom of other_adult_ca_symptom that have been diagnosed * - init_prop_treatment_status_other_adult_cancer - LIST - initial proportions of people with other_adult cancer previously given treatment * - init_prob_palliative_care - REAL - initial probability of being under palliative care if in metastatic * - r_site_confined_none - REAL - probabilty per 3 months of incident site_confined other_adult cancer amongst people age 15-29 with no other adult cancer * - rr_site_confined_age3049 - REAL - rate ratio for site-confined other_adult cancer for age 30-49 * - rr_site_confined_age5069 - REAL - rate ratio for site-confined other_adult cancer for age 50-69 * - rr_site_confined_agege70 - REAL - rate ratio for site-confined other_adult cancer for age ge 70 * - r_local_ln_site_confined_other_adult_ca - REAL - probabilty per 3 months of local ln other_adult cancer amongst people with site confined * - rr_local_ln_other_adult_ca_undergone_curative_treatment - REAL - rate ratio for local_ln for people with site_confined if had curative treatment at site_confined stage * - r_metastatic_local_ln - REAL - probabilty per 3 months of metastatic other_adult cancer amongst people with local_ln * - rr_metastatic_undergone_curative_treatment - REAL - rate ratio for metastatic Other_adult cancer for people with local_lnOther_adult cancer if had curative treatment at local_ln * - r_death_other_adult_cancer - REAL - probabilty per 3 months of death from other adult cancer mongst people with metastatic other_adult cancer * - r_early_other_adult_ca_symptom_site_confined_other_adult_ca - REAL - probability per 3 months of other_adult_ca_symptom in a person with site confined other_adult cancer * - rr_early_other_adult_ca_symptom_local_ln_other_adult_ca - REAL - rate ratio for other_adult_ca_symptom if have high grade other_adult cancer * - rr_early_other_adult_ca_symptom_metastatic_other_adult_ca - REAL - rate ratio for other_adult_ca_symptom if have metastatic other_adult cancer * - rp_other_adult_cancer_age3049 - REAL - relative prevalence at baseline of bladder cancer/cancer age 30-49 * - rp_other_adult_cancer_age5069 - REAL - relative prevalence at baseline of bladder cancer/cancer age 50-69 * - rp_other_adult_cancer_agege70 - REAL - relative prevalence at baseline of bladder cancer/cancer age 70+ * - sensitivity_of_diagnostic_device_for_other_adult_cancer_with_other_adult_ca_site_confined - REAL - sensitivity of diagnostic_device_for diagnosis of other_adult cancer for those with other_adult_ca_site-confined * - sensitivity_of_diagnostic_device_for_other_adult_cancer_with_other_adult_ca_local_ln - REAL - sensitivity of diagnostic_device_for diagnosis of other_adult cancer for those with other_adult_local_ln * - sensitivity_of_diagnostic_device_for_other_adult_cancer_with_other_adult_ca_metastatic - REAL - sensitivity of diagnostic_device_for diagnosis of other_adult cancer for those with other_adult_ca metastatic **PROPERTIES:** .. list-table:: :widths: 25 25 50 :header-rows: 1 * - Item - Type - Description * - oac_status - CATEGORICAL - Current status of the health condition, other_adult cancer. Possible values are: [none, site_confined, local_ln, metastatic, ] * - oac_date_diagnosis - DATE - the date of diagnosis of the other_adult_cancer (pd.NaT if never diagnosed) * - oac_date_treatment - DATE - date of first receiving attempted curative treatment (pd.NaT if never started treatment) * - oac_stage_at_which_treatment_given - CATEGORICAL - the cancer stage at which treatment is given (because the treatment only has an effect during the stageat which it is given.. Possible values are: [none, site_confined, local_ln, metastatic, ] * - oac_date_palliative_care - DATE - date of first receiving palliative care (pd.NaT is never had palliative care) * - oac_date_death - DATE - date of oac death **Class attributes:** CAUSES_OF_DEATH : {'OtherAdultCancer': } CAUSES_OF_DISABILITY : {'OtherAdultCancer': } INIT_DEPENDENCIES : {'SymptomManager', 'HealthSystem', 'Demography'} METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} gbd_causes_of_cancer_represented_in_this_module : ['Other malignant neoplasms', 'Nasopharynx cancer', 'Other pharynx cancer', 'Gallbladder and biliary tract cancer', 'Pancreatic cancer', 'Malignant skin melanoma', 'Non-melanoma skin cancer', 'Ovarian cancer', 'Testicular cancer', 'Kidney cancer', 'Thyroid cancer', 'Mesothelioma', 'Hodgkin lymphoma', 'Non-Hodgkin lymphoma', 'Multiple myeloma', 'Leukemia', 'Other neoplasms', 'Cervical cancer', 'Uterine cancer', 'Colon and rectum cancer', 'Lip and oral cavity cancer', 'Stomach cancer', 'Liver cancer'] **Functions (defined or overridden in class OtherAdultCancer):** .. automethod:: __init__ .. automethod:: read_parameters .. automethod:: initialise_population .. automethod:: initialise_simulation .. automethod:: on_birth .. automethod:: on_hsi_alert .. automethod:: report_daly_values .. autoclass:: OtherAdultCancerMainPollingEvent Bases: :class:`tlo.events.RegularEvent`, :class:`tlo.events.Event`, :class:`tlo.events.PopulationScopeEventMixin` **Class attributes:** __annotations__ : {} **Functions (defined or overridden in class OtherAdultCancerMainPollingEvent):** .. automethod:: __init__ .. automethod:: apply .. autoclass:: HSI_OtherAdultCancer_Investigation_Following_early_other_adult_ca_symptom Bases: :class:`tlo.methods.healthsystem.HSI_Event`, :class:`tlo.events.IndividualScopeEventMixin` **Functions (defined or overridden in class HSI_OtherAdultCancer_Investigation_Following_early_other_adult_ca_symptom):** .. automethod:: __init__ .. automethod:: apply .. autoclass:: HSI_OtherAdultCancer_StartTreatment Bases: :class:`tlo.methods.healthsystem.HSI_Event`, :class:`tlo.events.IndividualScopeEventMixin` **Functions (defined or overridden in class HSI_OtherAdultCancer_StartTreatment):** .. automethod:: __init__ .. automethod:: apply .. automethod:: did_not_run .. autoclass:: HSI_OtherAdultCancer_PostTreatmentCheck Bases: :class:`tlo.methods.healthsystem.HSI_Event`, :class:`tlo.events.IndividualScopeEventMixin` **Functions (defined or overridden in class HSI_OtherAdultCancer_PostTreatmentCheck):** .. automethod:: __init__ .. automethod:: apply .. automethod:: did_not_run .. autoclass:: HSI_OtherAdultCancer_PalliativeCare Bases: :class:`tlo.methods.healthsystem.HSI_Event`, :class:`tlo.events.IndividualScopeEventMixin` **Functions (defined or overridden in class HSI_OtherAdultCancer_PalliativeCare):** .. automethod:: __init__ .. automethod:: apply .. automethod:: did_not_run .. autoclass:: OtherAdultCancerLoggingEvent Bases: :class:`tlo.events.RegularEvent`, :class:`tlo.events.Event`, :class:`tlo.events.PopulationScopeEventMixin` **Class attributes:** __annotations__ : {} **Functions (defined or overridden in class OtherAdultCancerLoggingEvent):** .. automethod:: __init__ .. automethod:: apply