tlo.methods.newborn_outcomes module =================================== .. automodule:: tlo.methods.newborn_outcomes .. autoclass:: NewbornOutcomes Bases: :class:`tlo.core.Module` **PARAMETERS:** .. list-table:: :widths: 25 25 50 :header-rows: 1 * - Item - Type - Description * - prob_care_seeking_for_complication - LIST - baseline probability that a mother will seek care for an unwell neonate following delivery * - prob_day_reaches_week_one_event - LIST - Probabilities for day of attendance at postnatal week one event * - prob_early_onset_neonatal_sepsis_day_0 - LIST - baseline probability of a neonate developing early onset sepsis between birth and 24hrs * - rr_eons_maternal_chorio - LIST - relative risk of EONS in newborns whose mothers have chorioamnionitis * - rr_eons_maternal_prom - LIST - relative risk of EONS in newborns whose mothers have PROM * - rr_eons_preterm_neonate - LIST - relative risk of EONS in preterm newborns * - cfr_early_onset_sepsis - LIST - case fatality rate for a neonate due to neonatal sepsis * - cfr_late_onset_sepsis - LIST - case fatality rate for a neonate due to neonatal sepsis * - prob_mild_impairment_post_sepsis - LIST - probability of the mild neurodevelopmental impairment in survivors of sepsis * - prob_mod_severe_impairment_post_sepsis - LIST - probability of the moderate or severe neurodevelopmental impairment in survivors of sepsis * - prob_failure_to_transition - LIST - baseline probability of a neonate developing intrapartum related complications (previously birth asphyxia) following delivery * - prob_enceph_no_resus - LIST - Probability of a newborn who was not breathing at birth, and didnt receive resuscitation, developing encephalopathy * - cfr_failed_to_transition - LIST - case fatality rate for a neonate following failure to transition * - prob_encephalopathy - LIST - baseline odds of a neonate developing encephalopathy of any severity following birth * - rr_enceph_neonatal_sepsis - LIST - relative risk of neonatal encephalopathy if the neonate is also septic * - rr_enceph_obstructed_labour - LIST - relative risk for encephalopathy if the mothers labour was obstructed * - rr_enceph_acute_hypoxic_event - LIST - relative risk for encephalopathy if the mothers experience an acute event in labour * - prob_enceph_severity - LIST - probability of the severity of encephalopathy in a newborn who is encephalopathic * - prob_mild_impairment_post_enceph - LIST - probability of the mild neurodevelopmental impairment in survivors of encephalopathy * - prob_mod_severe_impairment_post_enceph - LIST - probability of the moderate or severe neurodevelopmental impairment in survivors of encephalopathy * - cfr_enceph - LIST - case fatality rate for a neonate due to mild encephalopathy * - cfr_multiplier_severe_enceph - LIST - multiplier for risk of death in a neonate with severe encephalopathy * - prob_respiratory_distress_preterm - LIST - probability that a preterm infant will experience respiratory distress at birth * - rr_rds_early_preterm - LIST - relative risk of RDS in a preterm newborn born before 34 weeks * - rr_rds_maternal_diabetes_mellitus - LIST - relative risk of RDS in a preterm newborn whose mother has DM * - rr_rds_maternal_gestational_diab - LIST - relative risk of RDS in a preterm newborn whose mother has gestational diabetes * - cfr_respiratory_distress_syndrome - LIST - case fatality rate for respiratory distress syndrome of prematurity * - prob_mild_disability_preterm_<32weeks - LIST - probability of mild long term neurodevelopmental disability in preterm infants born at less than 32 weeks gestation * - prob_mod_severe_disability_preterm_<32weeks - LIST - probability of moderate/severe longterm neurodevelopmental disability in preterm infants born at less than 32 weeks gestation * - prob_mild_disability_preterm_32_36weeks - LIST - probability of mild long term neurodevelopmental disability in preterm infants born between 32 and 36 weeks gestation * - prob_mod_severe_disability_preterm_32_36weeks - LIST - probability of moderate/severe long term neurodevelopmental disability in preterm infants born between 32 and 36 weeks gestation * - prob_retinopathy_preterm_early - LIST - Probability that a neonate born at less than 32 weeks who survives the neonatal period will develop retinopathy * - prob_retinopathy_preterm_late - LIST - Probability that a neonate born at less than 32 weeks who survives the neonatal period will develop retinopathy * - prob_retinopathy_severity_no_treatment - LIST - Probabilities that a preterm neonate who developed retinopathy will experience the following vision impairments: none, mild, moderate or blindness * - cfr_preterm_birth - LIST - case fatality rate for a neonate born prematurely * - rr_preterm_death_early_preterm - LIST - relative risk of preterm death in early preterm neonates * - prob_preterm_death_by_day - LIST - probability of death due to preterm complications occurring on days 0-14 * - prob_congenital_heart_anomaly - LIST - Probability of a congenital heart anomaly in the newborn * - prob_limb_musc_skeletal_anomaly - LIST - Probability of a congenital limb or musculoskeletal anomaly in the newborn * - prob_urogenital_anomaly - LIST - Probability of a congenital urogenital anomaly in the newborn * - prob_digestive_anomaly - LIST - Probability of a congenital digestive anomaly in the newborn * - prob_other_anomaly - LIST - Probability of a other congenital anomalies in the newborn * - cfr_congenital_heart_anomaly - LIST - case fatality rate for newborns with congenital heart anomalies * - cfr_limb_or_musculoskeletal_anomaly - LIST - case fatality rate for newborns with congenital limb/musculoskeletal anomalies * - cfr_urogenital_anomaly - LIST - case fatality rate for newborns with congenital urogenital anomalies * - cfr_digestive_anomaly - LIST - case fatality rate for newborns with congenital digestive anomalies * - cfr_other_anomaly - LIST - case fatality rate for newborns with other congenital anomalies * - prob_cba_death_by_age_group - LIST - probabilities that death from a congenital birth anomaly will occur once the individual reaches the following age groups: early neonatal, late neonatal, post neonatal 1-4 years, 5-9 years, 10 -14 years or 15-69 years * - prob_early_breastfeeding_hb - LIST - probability that a neonate will be breastfed within the first hour following birth when delivered at home * - prob_breastfeeding_type - LIST - probabilities that a woman is 1.) not breastfeeding 2.) non-exclusively breastfeeding 3.)exclusively breastfeeding at birth (until 6 months) * - prob_early_breastfeeding_hf - LIST - probability that a neonate will be breastfed within the first hour following birth when delivered at a health facility * - prob_pnc_check_newborn - LIST - probability that a neonate will receive a full postnatal check * - prob_timings_pnc_newborns - LIST - probabilities that a postnatal check will happen before or after 48 hours alive * - prob_kmc_available - LIST - probability that KMC can be delivered in a given hospital * - treatment_effect_inj_abx_sep - LIST - effect of injectable antibiotics treatment on reducing mortality from sepsis * - treatment_effect_supp_care_sep - LIST - effect of full supportive care treatment on reducing mortality from sepsis * - treatment_effect_cord_care - LIST - effect of full supportive care treatment on reducing incidence of sepsis * - treatment_effect_clean_birth - LIST - effect of clean birth practices on reducing incidence of sepsis * - treatment_effect_early_init_bf - LIST - effect of early initiation of breastfeeding on reducing incidence of sepsis * - treatment_effect_resuscitation - LIST - effect of resuscitation on newborn mortality associated with encephalopathy * - treatment_effect_resuscitation_preterm - LIST - effect of resuscitation on newborn mortality associated with prematurity * - treatment_effect_abx_prom - LIST - effect of antibiotics given to mothers experience PROM on risk of newborn sepsis * - treatment_effect_steroid_preterm - LIST - relative risk of death for preterm neonates following administration of antenatal corticosteroids * - treatment_effect_kmc - LIST - treatment effect of kangaroo mother care on preterm mortality **PROPERTIES:** .. list-table:: :widths: 25 25 50 :header-rows: 1 * - Item - Type - Description * - nb_is_twin - BOOL - whether this is part of a twin pair * - nb_twin_sibling_id - INT - id number of this twins sibling * - nb_early_preterm - BOOL - whether this neonate has been born early preterm (24-33 weeks gestation) * - nb_late_preterm - BOOL - whether this neonate has been born late preterm (34-36 weeks gestation) * - nb_preterm_birth_disab - CATEGORICAL - Disability associated with preterm delivery. Possible values are: [none, mild_motor_and_cog, mild_motor, moderate_motor, severe_motor, ] * - nb_congenital_anomaly - INT - Types of congenital anomaly of the newborn stored as bitset * - nb_early_onset_neonatal_sepsis - BOOL - whether this neonate has developed neonatal sepsis following birth * - nb_inj_abx_neonatal_sepsis - BOOL - If this neonate has injectable antibiotics as treatment for neonatal sepsis * - nb_supp_care_neonatal_sepsis - BOOL - If this neonate has received full supportive care for neonatal sepsis (in hospital) * - nb_neonatal_sepsis_disab - CATEGORICAL - Disability associated neonatal sepsis. Possible values are: [none, mild_motor_and_cog, mild_motor, moderate_motor, severe_motor, ] * - nb_preterm_respiratory_distress - BOOL - whether this preterm newborn has respiratory distress syndrome (RDS) * - nb_not_breathing_at_birth - BOOL - whether this neonate has failed to transition to breathing on their own following birth * - nb_received_neonatal_resus - BOOL - If this neonate has received resuscitation * - nb_encephalopathy - CATEGORICAL - None, mild encephalopathy, moderate encephalopathy, severe encephalopathy. Possible values are: [none, mild_enceph, moderate_enceph, severe_enceph, ] * - nb_encephalopathy_disab - CATEGORICAL - Disability associated neonatal sepsis. Possible values are: [none, mild_motor_and_cog, mild_motor, moderate_motor, severe_motor, ] * - nb_retinopathy_prem - CATEGORICAL - Level of visual disturbance due to retinopathy of prematurity: None, mild, moderate, severe, blindness. Possible values are: [none, mild, moderate, severe, blindness, ] * - nb_low_birth_weight_status - CATEGORICAL - extremely low birth weight (<1000g), very low birth weight (<1500g), low birth weight (<2500g),normal birth weight (>2500g), macrosomia (>4000g). Possible values are: [extremely_low_birth_weight, very_low_birth_weight, low_birth_weight, normal_birth_weight, macrosomia, ] * - nb_size_for_gestational_age - CATEGORICAL - size for gestational age categories. Possible values are: [small_for_gestational_age, average_for_gestational_age, large_for_gestational_age, ] * - nb_early_init_breastfeeding - BOOL - whether this neonate initiated breastfeeding within 1 hour of birth * - nb_breastfeeding_status - CATEGORICAL - How this neonate is being breastfed. Possible values are: [none, non_exclusive, exclusive, ] * - nb_kangaroo_mother_care - BOOL - whether this neonate received kangaroo mother care following birth * - nb_clean_birth - BOOL - whether this neonate received clean birth practices at delivery * - nb_death_after_birth - BOOL - whether this child has died following complications after birth * - nb_pnc_check - INT - Number of postnatal checks received in the postnatal period **Class attributes:** ADDITIONAL_DEPENDENCIES : {'PostnatalSupervisor', 'PregnancySupervisor', 'CareOfWomenDuringPregnancy', 'Labour'} CAUSES_OF_DEATH : {'early_onset_sepsis': , 'late_onset_sepsis': , 'encephalopathy': , 'neonatal_respiratory_depression': , 'preterm_other': , 'respiratory_distress_syndrome': , 'congenital_heart_anomaly': , 'limb_or_musculoskeletal_anomaly': , 'urogenital_anomaly': , 'digestive_anomaly': , 'other_anomaly': } CAUSES_OF_DISABILITY : {'Retinopathy of Prematurity': , 'Neonatal Encephalopathy': , 'Neonatal Sepsis Long term Disability': , 'Preterm Birth Disability': } INIT_DEPENDENCIES : {'Demography', 'HealthSystem'} METADATA : {, , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} **Functions (defined or overridden in class NewbornOutcomes):** .. automethod:: __init__ .. automethod:: read_parameters .. automethod:: initialise_population .. automethod:: get_and_store_newborn_item_codes .. automethod:: initialise_simulation .. automethod:: eval .. automethod:: apply_risk_of_congenital_anomaly .. automethod:: apply_risk_of_neonatal_infection_and_sepsis .. automethod:: apply_risk_of_encephalopathy .. automethod:: apply_risk_of_preterm_respiratory_distress_syndrome .. automethod:: apply_risk_of_not_breathing_at_birth .. automethod:: scheduled_week_one_postnatal_event .. automethod:: set_death_status .. automethod:: set_disability_status .. automethod:: essential_newborn_care .. automethod:: breast_feeding .. automethod:: kangaroo_mother_care .. automethod:: hiv_screening_for_at_risk_newborns .. automethod:: apply_effect_of_neonatal_resus .. automethod:: assessment_and_treatment_newborn_sepsis .. automethod:: link_twins .. automethod:: schedule_pnc .. automethod:: on_birth .. automethod:: on_hsi_alert .. automethod:: report_daly_values .. automethod:: run_if_care_of_the_receives_postnatal_check_cant_run .. autoclass:: HSI_NewbornOutcomes_ReceivesPostnatalCheck Bases: :class:`tlo.methods.hsi_event.HSI_Event`, :class:`tlo.events.IndividualScopeEventMixin` **Class attributes:** __annotations__ : {} **Functions (defined or overridden in class HSI_NewbornOutcomes_ReceivesPostnatalCheck):** .. automethod:: __init__ .. automethod:: apply .. automethod:: never_ran .. automethod:: did_not_run .. automethod:: not_available .. automethod:: _get_facility_level_for_pnc .. autoclass:: HSI_NewbornOutcomes_NeonatalWardInpatientCare Bases: :class:`tlo.methods.hsi_event.HSI_Event`, :class:`tlo.events.IndividualScopeEventMixin` **Class attributes:** __annotations__ : {} **Functions (defined or overridden in class HSI_NewbornOutcomes_NeonatalWardInpatientCare):** .. automethod:: __init__ .. automethod:: apply .. automethod:: did_not_run .. automethod:: not_available .. autoclass:: BreastfeedingStatusUpdateEventSixMonths Bases: :class:`tlo.events.Event`, :class:`tlo.events.IndividualScopeEventMixin` **Functions (defined or overridden in class BreastfeedingStatusUpdateEventSixMonths):** .. automethod:: __init__ .. automethod:: apply .. autoclass:: BreastfeedingStatusUpdateEventTwoYears Bases: :class:`tlo.events.Event`, :class:`tlo.events.IndividualScopeEventMixin` **Functions (defined or overridden in class BreastfeedingStatusUpdateEventTwoYears):** .. automethod:: __init__ .. automethod:: apply